Zoekresultaten - 21 results
Wastewater-based epidemiological surveillance- Weekly report
Linussio; Koenraad Van Hoorde; Steven Van Gucht; Karin De Ridder; Koen Blot; Veronik Hutse; Marie Lesenfants Source: Sciensano, Brussels, Belgium, p.26 (2024) Accession Number: D/2024.14.440/28 URL: ...
Wastewater-based epidemiological surveillance- Methodological appendix
Linussio; Koenraad Van Hoorde; Steven Van Gucht; Karin De Ridder; Koen Blot; Veronik Hutse; Marie Lesenfants Source: Sciensano, Brussels, Belgium, p.17 (2024) Accession Number: D/2024.14.440/27 URL: https://www.sciensano.be/en/biblio/wastewater-based-epidemiological-surveillance-methodological-appendix ...
Development of strain-level shotgun metagenomics approaches to detect and characterize microbiological contaminants in the context of food safety
laboratories in the future. The method was first tested on minced beef spiked with shiga toxin-producing E.coli (STEC) at very low level (5 CFU /25g). After enrichment for 16 or 24 hours in buffered peptone ...
Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillanceAbstract
Publication Type: Peer reviewed scientific article Authors: Bram Bloemen; Mathieu Gand; Kevin Vanneste; Marchal, Kathleen; Nancy Roosens; Sigrid C.J. De Keersmaecker Source: Scientific Reports, ...
Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteriaAbstractBackgroundResultsConclusion
Publication Type: Peer reviewed scientific article Authors: Mathieu Gand; Bram Bloemen; Kevin Vanneste; Nancy Roosens; Sigrid C.J. De Keersmaecker Source: BMC Genomics, Volume 24, Issue 1 (2023) ...
Report on an initial assessment of long-read sequencing for metagenome (community and AMR) analysis (defined community, spiked and real simple and complex matrices) and comparison to current short-read standard
Michael Brouwer; Quillan Dijkstra; Søren Overballe-Petersen; Søren Persson; Astrid Rasmussen; Bruno Gonzalez-Zorn; Manal AbuOun Source: OpenAIRE, Zenodo, p.44 (2022) Accession Number: 10.5281/zenodo.7429360 ...
Report on the feasibility of using Hi-C sequencing for metagenomics to define the context of AMR genes
Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Sigrid C.J. De Keersmaecker; Josephine Grützke; Carlus Deneke; Jennie Fischer; Lee Julia Bartsch; Bram ...
Optimised long-read sequence bioinformatics tool for the analysis of the resistome and microbial communities
Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Manal AbuOun; Saria Otani; Indre Navickaite; Mathieu Gand; Bram Bloemen; Kevin Vanneste; Valeria Michelacci; ...
Report on initial findings of on-site diagnostic tests and IT solutions for human clinical, veterinary and environmental samples for early warning of emerging resistant pathogens
Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Manal AbuOun; Indre Navickaite; Thomas I. Wilkes; Marco Di Domenico; Giuliano Garofolo; Bram Bloemen; ...
Detection and identification of authorized and unauthorized GMOs using high-throughput sequencing with the support of a sequence-based GMO database
Publication Type: Peer reviewed scientific article Authors: Assia Saltykova; Julien Van Braekel; N. Papazova; Marie-Alice Fraiture; Deforce, Dieter; Kevin Vanneste; Sigrid C.J. De Keersmaecker; ...