Zoekresultaten - 10 results

Strain-level characterization without culture enrichment? Easing and accelerating outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

Publication Type: Scientific poster, presentation or proceeding Authors: Florence E Buytaers; Bavo Verhaegen; Tom Van Nieuwenhuysen; Nancy Roosens; Kevin Vanneste; Kathleen Marchal; Sigrid C.J. De ...

Targeted High-Throughput Sequencing Enables the Detection of Single Nucleotide Variations in CRISPR/Cas9 Gene-Edited Organisms

Sigrid C.J. De Keersmaecker; Kevin Vanneste; Nancy Roosens Source: Foods, Volume 12, Issue 3 (2023) Keywords: CRISPR/Cas9 detection food and feed chain Genetically modified organism high-throughput ...

Shotgun metagenomics as a ONE Health tool for better protecting human health

Piérard; Bert Bogaerts; Kathleen Marchal; The FARMED consortium; Nancy Roosens; Kevin Vanneste; Sigrid C.J. De Keersmaecker Source: EFSA One, Issue EFSA (2022) Abstract: Introduction: Open approaches to ...

Listeria monocytogenes isolates from Cornu aspersum snails: Whole genome-based characterization and host-pathogen interactions in a snail infection model.

Publication Type: Peer reviewed scientific article Authors: Kotzamanidis, Charalampos; Malousi, Andigoni; Esmeralda Dushku; Alexandre Dobly; Sigrid C.J. De Keersmaecker; Nancy Roosens; Karathodorou, ...

Detection and identification of authorized and unauthorized GMOs using high-throughput sequencing with the support of a sequence-based GMO database

Publication Type: Peer reviewed scientific article Authors: Assia Saltykova; Julien Van Braekel; N. Papazova; Marie-Alice Fraiture; Deforce, Dieter; Kevin Vanneste; Sigrid C.J. De Keersmaecker ...

Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak

Pochet, Brigitte; Vera Cantaert; Marchal, Kathleen; Sarah Denayer; Sigrid C.J. De Keersmaecker Source: Microbial Genomics, Volume 7, Issue 4 (2021) Keywords: food surveillance Metagenomics outbreak ...

A shotgun metagenomics approach to detect and characterize unauthorized genetically modified microorganisms in microbial fermentation products

Nancy Roosens; Sigrid C.J. De Keersmaecker Source: Food Chemistry: Molecular Sciences, Volume 2 (2021) Keywords: AMR genetically modified microorganism identification long and short read sequencing ...

A genoserotyping system for a fast and objective identification of Salmonella serotypes commonly isolated from poultry and pork food sectors in Belgium.

Publication Type: Peer reviewed scientific article Authors: Mathieu Gand; Wesley Mattheus; Nancy Roosens; Katelijne Dierick; Marchal, Kathleen; Sophie Bertrand; Sigrid C.J. De Keersmaecker Source: ...

Strategy for the identification of micro-organisms producing food and feed products: Bacteria producing food enzymes as study case

Publication Type: Peer reviewed scientific article Authors: Marie Deckers; Kevin Vanneste; Raf Winand; Sigrid C.J. De Keersmaecker; Sarah Denayer; Marc Heyndrickx; Dieter Deforce; Marie-Alice ...

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