Zoekresultaten - 7 results
Transforming Shiga toxin-producing surveillance through whole genome sequencing in food safety practices.
to isolates collected within the context of Belgian food safety surveillance and combined with data from clinical isolates to evaluate its benefits. A cross-sector WGS-based collection of 754 strains ...
Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods
bacterial pathogenic isolates at single nucleotide resolution, making it the ultimate tool for routine surveillance and outbreak investigation. The lack of standardization, and the variation regarding ...
Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study.
successful foodborne outbreak investigation using a metagenomic approach, it is, however, necessary to bioinformatically separate the genomes of individual strains, including strains belonging to the same ...
A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine.
chain reactions (qPCRs) are used in routine. In recent years, the use of whole genome sequencing (WGS) of bacterial isolates has proven its value to collect relevant information for strain ...
The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country.
process and incite policy makers to support its implementation, a Shiga toxin-producing (STEC) O157: H7 (+, +, +) outbreak (2012) and a STEC O157: H7 (+, +) outbreak (2013) were retrospectively analyzed ...
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates
challenges of standardizing protocols to support data portability and to enable full exploitation of its potential. Health Topics: Pathogenic E. coli Pathogene E. coli E. coli pathogènes Manuscript versions: ...
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates.
its potential. Health Topics: Pathogene E. coli Pathogenic E. coli E. coli pathogènes Food-borne illness Voedseltoxi-infecties (toxi-)infection alimentaire (TIA) Service: Pathogènes alimentaires ...