Zoekresultaten - 86 results
Whole-Genome Sequence Approach and Phylogenomic Stratification Improve the Association Analysis of Mutations With Patient Data in Influenza Surveillance
Publication Type: Peer reviewed scientific article Authors: Laura Van Poelvoorde; Kevin Vanneste; Sigrid C.J. De Keersmaecker; Isabelle Thomas; Nina Van Goethem; Steven Van Gucht; Xavier Saelens; ...
Whole-genome sequencing-based phylogenomic investigation of unexpected Bacillus cereus contaminations collected from commercial vitamin B2 food and feed additives sold on the Belgian market
Keersmaecker; Nancy Roosens; Kevin Vanneste Source: Applied Bioinformatics and Public Health Microbiology, Wellcome Genome Campus, Hinxton, OK (2023) Service: Activités transversales en génomique appliquée ...
Transforming Shiga toxin-producing surveillance through whole genome sequencing in food safety practices.
Publication Type: Peer reviewed scientific article Authors: Nouws, Stéphanie; Bavo Verhaegen *; Denayer, Sarah; Florence Crombé *; Denis Piérard; Bert Bogaerts *; Kevin Vanneste *; Kathleen Marchal; ...
Using a combination of short and long read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum-beta-lactamases (ESBL) in clinical Shigella and Salmonella isolates in Belgium
Publication Type: Peer reviewed scientific article Authors: Bas Berbers; Kevin Vanneste; Nancy Roosens; Marchal,K.; Pieter-Jan Ceyssens; Sigrid C.J. De Keersmaecker Source: Microbial Genomics, ...
Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillanceAbstract
Publication Type: Peer reviewed scientific article Authors: Bram Bloemen; Mathieu Gand; Kevin Vanneste; Marchal, Kathleen; Nancy Roosens; Sigrid C.J. De Keersmaecker Source: Scientific Reports, ...
Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteriaAbstractBackgroundResultsConclusion
Publication Type: Peer reviewed scientific article Authors: Mathieu Gand; Bram Bloemen; Kevin Vanneste; Nancy Roosens; Sigrid C.J. De Keersmaecker Source: BMC Genomics, Volume 24, Issue 1 (2023) ...
Targeted High-Throughput Sequencing Enables the Detection of Single Nucleotide Variations in CRISPR/Cas9 Gene-Edited Organisms
Sigrid C.J. De Keersmaecker; Kevin Vanneste; Nancy Roosens Source: Foods, Volume 12, Issue 3 (2023) Keywords: CRISPR/Cas9 detection food and feed chain Genetically modified organism high-throughput ...
Report on an initial assessment of long-read sequencing for metagenome (community and AMR) analysis (defined community, spiked and real simple and complex matrices) and comparison to current short-read standard
Otani; Giuliano Garofolo; Marco Di Domenico; Valeria Michelacci; Bosco R Matamoros; Carlus Deneke; Lisa Di Marcantonio; Francesca Marotta; Jennie Fischer; Bram Bloemen; Kevin Vanneste; Nancy Roosens; ...
Report on the feasibility of using Hi-C sequencing for metagenomics to define the context of AMR genes
Bloemen; Kevin Vanneste; Jolien D'aes; Nancy Roosens; Manal AbuOun Source: OpenAIRE, Zenodo, p.10 (2022) Accession Number: https://zenodo.org/record/7433351#.Y7aj4HbMKM8 URL: ...
Optimised long-read sequence bioinformatics tool for the analysis of the resistome and microbial communities
Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Manal AbuOun; Saria Otani; Indre Navickaite; Mathieu Gand; Bram Bloemen; Kevin Vanneste; Valeria Michelacci; ...