Zoekresultaten - 17 results

RNA sequencing of avian paramyxovirus (Paramyxoviridae, Avulavirinae) isolates from wild mallards in Belgium, 2021: complete genomes and coinfections.

genome segments of an AIV of subtype H11N9 could be de novo assembled from the sequencing data. Besides an AIV coinfection, RNA metagenomic data from the APMV-4 isolate also showed evidence of ...

Report on the feasibility of using Hi-C sequencing for metagenomics to define the context of AMR genes

https://zenodo.org/record/7433351#.Y7aj4HbMKM8 Keywords: Antimicrobial resistance Hi-C metagenomics Health Topics:  Antimicrobial resistance (AMR) Food consumption and food safety Animal health Health and environment Résistance aux ...

Optimised long-read sequence bioinformatics tool for the analysis of the resistome and microbial communities

https://doi.org/10.5281/zenodo.7433258 Keywords: Antimicrobial resistance bioinformatics Long read metagenomic sequencing Microbial community Resistome Health Topics:  Antimicrobial resistance (AMR) Food consumption and food safety ...

Report on initial findings of on-site diagnostic tests and IT solutions for human clinical, veterinary and environmental samples for early warning of emerging resistant pathogens

https://doi.org/10.5281/zenodo.7433281 URL: https://doi.org/10.5281/zenodo.7433281 Keywords: Long read metagenomics Metagenome On-site metagenomics Health Topics:  Antimicrobial resistance (AMR) Food consumption and food safety Animal ...

Metagenomic sequencing determines complete infectious bronchitis virus (avian Gammacoronavirus) vaccine strain genomes and associated viromes in chicken clinical samples.

identified both fixed and minor frequency variations in the tissue sample compared to its in ovo-passaged virus. Metagenomic methods allow the determination of complete coronavirus genomes from clinical ...

Key considerations for the implementation of high throughput sequencing based metagenomics (mNGS) in diagnostic clinical, food and veterinary labs: a no-nonsense pointer. the Metastava consortium

Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Steven Van Borm; Frank Vandenbussche; Kris De Clercq; Andy Haegeman; Sigrid C.J. De Keersmaecker; Kevin Vanneste; Michael Peeters; Steven Van Gucht; Yannick Blanchar ...

Review on current scientific literature and overview of commercially available methods for on-site DNA isolation

https://doi.org/10.5281/zenodo.4724557 Keywords: AMR Antimicrobial resistance DNA isolation literature review metagenomic On-site Health Topics:  Health and disease monitoring Food consumption and food safety Animal health Health and ...

Increased viral read counts and metagenomic full genome characterization of porcine astrovirus 4 and Posavirus 1 in sows in a swine farm with unexplained neonatal piglet diarrhea

Publication Type: Peer reviewed scientific article Authors: Steven Van Borm; Kevin Vanneste; Fu, Qiang; Maes, Dominiek; Alexandra Schoos; Eline Vallaey; Frank Vandenbussche Source: Virus Genes, Volume 56, Issue 6 (2020) Health Topics:  Animal health Santé ...

Evaluation of a commercial exogenous internal process control for diagnostic RNA virus metagenomics from different animal clinical samples

Virological Methods, Volume 283 (2020) Keywords: Animals Feces High-Throughput Nucleotide Sequencing Mengovirus Metagenomics Rna RNA Virus Infections RNA Viruses Swine Swine Diseases Viral Sensitivity and ...

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