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phylogenetic

Zoekresultaten - 96 results

Genomic epidemiology of emerging ESBL-producing Kentucky in Europe.

present urinary-tract infections. Bayesian time-scaled phylogeny on whole genome sequences of isolates from these cases and supplementary isolates from public sequence databases was used to infer the origin ...

Phylogenetic Analysis of Belgian Small Ruminant Lentiviruses Supports Cross Species Virus Transmission and Identifies New Subtype B5 Strains.

current SRLV phylogeny revealed that many subtypes have been defined over the years based on limited sequence information. To keep phylogeny as a useful tool, we advocate to apply more rigorous sequencing ...

Updating the Taxonomy of Dermatophytes of the BCCM/IHEM Collection According to the New Standard: A Phylogenetic Approach.

Dermatophyten Dermatophytes ITS phylogenetics Phylogeny Taxonomy Tubulin Abstract: Recent taxonomical revisions based on multilocus gene sequencing have provided some clarifications to dermatophyte ...

Black aspergilli: A remaining challenge in fungal taxonomy?

Keywords: antifungal susceptibility Aspergillus sect. Nigri MALDI-TOF MS Phylogeny Abstract: Aspergillus section Nigri is a taxonomically difficult but medically and economically important group. In this ...

Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:.

PLoS One, Volume 13, Issue 2 (2018) Keywords: bacterial phylogeny; food-borne; genes; NGS; WGS; computational biology/bioinformatics; disease outbreaks; outbreak; performance evaluation; pipeline; ...

Complete coding sequence of a novel picorna-like virus in a blackbird infected with Usutu virus.

Volume 163, Issue 6 (2018) Keywords: Animals Belgium Bird Diseases Chromosome Mapping Coinfection Flavivirus Flavivirus Infections Genome, Viral Open Reading Frames Passeriformes Phylogeny Picornaviridae ...

Fusarium, clinical relevance and mass spectrometry methods for identification, using strains of the Belgian fungal culture collection BCCM/IHEM

isolated from patients, were re-identified by multilocus DNA marker sequencing and phylogeny. The remaining 289 validated strains, comprising 40 different species, were of great value: (i) Analysis of the ...

Molecular epidemiology of Mycobacterium tuberculosis complex in Brussels, 2010-2013.

Resistance, Multiple, Bacterial Emigrants and Immigrants Family Health Female Genetic Variation Genotype Hospitals, Urban Humans incidence Male middle aged Mycobacterium tuberculosis Phylogeny Population ...

Foot-and-mouth disease virus serotype SAT1 in cattle, Nigeria.

Transbound Emerg Dis, Volume 64, Issue 3, p.683-690 (2017) Keywords: Animals Cattle Cattle Diseases Disease Outbreaks Foot-and-Mouth Disease Foot-and-Mouth Disease Virus Nigeria Phylogeny Serogroup Abstract: ...

Multi-laboratory validation study of multilocus variable-number tandem repeat analysis (MLVA) for Salmonella enterica serovar Enteritidis, 2015.

Multilocus Sequence Typing Phylogeny Predictive Value of Tests Public Health Surveillance Reproducibility of Results Salmonella enteritidis Salmonella Food Poisoning Salmonella Infections Tandem Repeat ...

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