Zoekresultaten - 86 results

Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium

Publication Type: Peer reviewed scientific article Authors: Berbers, Bas; Vanneste, Kevin; Roosens, Nancy H. C. J.; Marchal, Kathleen; Pieter-Jan Ceyssens *; De Keersmaecker, Sigrid C. J. Source: Microbial Genomics, Volume 9, Issue 1 (2023) Health Topics: ...

20231214_RAG_GENOMIC-SEQUENCING_RESPIRATORY-VIRUSES

Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Source: Sciensano, Brussels, p.10 (2023) Keywords: Genomics respiratory infections Abstract: 20231214_RAG_GENOME- SECUENCING_RESPIRATORY- VIRUSES Health Topics:  Hea ...

A genomic appraisal of invasive Salmonella Typhimurium and associated antibiotic resistance in sub-Saharan Africa.

sequence data from 1303 S. Typhimurium isolates originating from 19 African countries and isolated between 1979 and 2017, here we show a thorough scaled appraisal of the population structure of iNTS disease ...

Genomic monitoring of SARS-CoV-2 variants using sentinel SARI hospital surveillance.

patients fulfilling the Belgian SARI definition between January 2020 and December 2022 were sequenced using the ARTIC Network amplicon tiling approach on a MinION platform. Weekly variant of concern (VOC) ...

Virological surveillance of influenza in Belgium, season 2019-2020

viruses fell in the 6B. 1A5A subgroup represented by the reference strain A/Norway/3433/2018. About half of the sequenced A(H3N2) viruses belonged to the clade 3C.2a1 and the remaining belonged to the ...

Targeted Chromosomal Barcoding Establishes Direct Genotype-Phenotype Associations for Antibiotic Resistance in Mycobacterium abscessus.

Gonzalo-Asensio, Jesús Source: Microbiol Spectr (2023) Abstract: A bedaquiline-resistant Mycobacterium abscessus isolate was sequenced, and a candidate mutation in the gene was identified as responsible for the ...

Genomic Insights into Methicillin-Resistant Staphylococcus aureus spa type t899 Isolates Belonging to Different Sequence Types

Publication Type: Peer reviewed scientific article Authors: Tegegne, Henok Ayalew; Ivana Koláčková; Martina Florianová; P Wattiau; Tereza Gelbíčová; Cécile Boland; Jean-Yves Madec; Marisa Haenni; Renata Karpíšková Source: Applied and Environmental Microbi ...

Report on an initial assessment of long-read sequencing for metagenome (community and AMR) analysis (defined community, spiked and real simple and complex matrices) and comparison to current short-read standard

Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Sigrid C.J. De Keersmaecker; Mathieu Gand; Indre Navickaite; Josephine Gruetzke; Lee-Julia Bartsch; Saria Otani; Giuliano Garofolo; Marco Di Domenico; Valeria Michel ...

Evaluating methodological approaches to assess the severity of infection with SARS-CoV-2 variants: scoping review and applications on Belgian COVID-19 data.

versus the occurrence of severe complications or death) and exposure to a variant (e.g., linkage of the sequencing or genotyping result with the patient data through a unique identifier versus ...

First Belgian Report of Ertapenem Resistance in an ST11 Klebsiella Pneumoniae Strain Isolated from a Dog Carrying blaSCO-1 and blaDHA-1 Combined with Permeability Defects

Antibiotics, Volume 11, Issue 9 (2022) Keywords: antimicrobial resistance (AMR) carbapenem companion animal emerging risk hybrid sequencing Klebsiella pneumoniae OmpK37 Sepsis sequence type 11 Abstract: ...

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