Zoekresultaten - 633 results
Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak
conventional analysis based on isolation, serotyping and MLVA (multilocus variable number tandem repeat analysis) comparison, followed by whole-genome sequencing, to confirm the source of the contamination over ...
Molecular and virological characterization of the first poultry outbreaks of Genotype VII.2 velogenic avian orthoavulavirus type 1 (NDV) in North-West Europe, BeNeLux, 2018.
polybasic sequence of the fusion gene cleavage site and the intracerebral pathotyping assay demonstrated the high pathogenicity of the strain. This paper represents the first notification of this specific ...
Coverage of the national surveillance system for human Salmonella infections, Belgium, 2016-2020.
Food Poisoning Salmonella Infections whole genome sequencing Abstract: INTRODUCTION: The surveillance of human salmonellosis in Belgium is dependent on the referral of human Salmonella isolates to the ...
Infective endocarditis caused by on a prosthetic pulmonary valve with false positive serology for- The first described case.
a favourable outcome. The causative agent was which was identified on the infected valve by sequencing of 16S ribosomal RNA. To our knowledge, this is the first described case of a infective endocarditis on ...
Whole-Genome Sequencing-Based Antimicrobial Resistance Characterization and Phylogenomic Investigation of 19 Multidrug-Resistant and Extended-Spectrum Beta-Lactamase-Positive Escherichia coli Strains Collected From Hospital Patients in Benin in 2019.
effective antibiotics. We used whole-genome sequencing (WGS) to evaluate antimicrobial resistance and the phylogenomic relationships of 19 ESBL-positive isolates collected from surgical site infections in ...
Case Report: Multidrug Resistant Raoultella ornithinolytica in a Septicemic Calf
potentiated sulphonamides, streptomycin, tetracyclines and intermediate susceptibility for enrofloxacin. Whole genome sequencing confirmed identification as and the multidrug resistant character of the isolate. ...
Key considerations for the implementation of high throughput sequencing based metagenomics (mNGS) in diagnostic clinical, food and veterinary labs: a no-nonsense pointer. the Metastava consortium
Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Steven Van Borm; Frank Vandenbussche; Kris De Clercq; Andy Haegeman; Sigrid C.J. De Keersmaecker; Kevin Vanneste; Michael Peeters; Steven Van Gucht; Yannick Blanchar ...
Development of a real-time PCR marker targeting a new unauthorized genetically modified microorganism producing protease identified by DNA walking
sequences between the pUB110 shuttle vector and a Bacillus amyloliquefaciens gene coding for a protease, the presence of the GMM was shown. Based on these sequences of interest, a real-time PCR marker was ...
Precision cancer medicine: What has translated into clinical use in Belgium?
Cancer Biol (2021) Keywords: cancer EVALUATION implementation Precision Medicine Abstract: RATIONALE: In 2016, Belgium launched the Next Generation Sequencing (NGS) Roadbook, consisting in 10 Actions, ...
Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies
Technologies, and we compared this to Illumina short-read-based metagenomics. After 12 h of MinION sequencing, strain-level characterization could be achieved, linking the food containing a pathogen to the ...