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genotyping

Zoekresultaten - 148 results

Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak

conventional analysis based on isolation, serotyping and MLVA (multilocus variable number tandem repeat analysis) comparison, followed by whole-genome sequencing, to confirm the source of the contamination over ...

Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies

serotyped. This was achieved by applying a bioinformatics method on the long reads using reference-based classification. The same result could be obtained after 24-h sequencing on the more recent lower output ...

Nearly Complete Genome Sequences of Two Bluetongue Viruses Isolated during the 2020 Outbreak in the Grand Duchy of Luxembourg.

virus serotype 8 (BTV-8) has been considered enzootic in France since 2018. Here, we report the nearly complete genome sequences of two BTV-8 isolates from the 2020 outbreak in the Grand Duchy ...

A genoserotyping system for a fast and objective identification of Salmonella serotypes commonly isolated from poultry and pork food sectors in Belgium.

poultry-derived food products. Therefore, a strict monitoring of Salmonella serotypes in food-producing animals is needed to limit the transmission of the pathogen to humans. Additionally, Salmonella can lead to ...

Complex Circulation of Foot-and-Mouth Disease Virus in Cattle in Nigeria.

the domestic production, large numbers of livestock are imported from neighboring countries without sanitary restrictions. In Nigeria, foot-and-mouth disease virus (FMDV) serotypes O, A, and Southern ...

Epidemiologische surveillance van invasieve infecties met Haemophilus influenzae- 2018

zogenaamde “atypische” stammen. Ook in andere Europese landen is de opkomst van atypische stammen waargenomen. Van de ingekapselde stammen was serotype f de meest voorkomende (n=14), gevolgd door serotype ...

Epidemiologische surveillance van invasieve pneumokokkeninfecties (IPD)- 2018

pre-vaccinatie periode. Variatie in serotypes over de tijd is er vooral bij kinderen jonger dan 2 jaar. In deze leeftijdsgroep is er sinds 2011 een daling van PCV10-serotypes. Er was een lichte stijging van de incidentie ...

Listeria surveillance in Belgium

strains are voluntarily sent to the National Reference Center (NRC). Identity confirmation is performed using biochemical assays and serotyping by slide agglutination. Since 2018, according to recent ...

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