Zoekresultaten - 70 results

Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates.

C.J. De Keersmaecker Source: Sci Rep, Volume 10, Issue 1 (2020) Keywords: NGS pathogenic E. coli STEC WGS Abstract: Whole genome sequencing (WGS) has proven to be the ultimate tool for bacterial isolate ...

Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198.

an emerging problem within this serotype. We used whole-genome sequencing (WGS) to investigate the phylogenetic structure and AMR content of 121 S.enterica serotype Kentucky sequence type 198 isolates ...

Status and potential of bacterial genomics for public health practice: a scoping review

of whole-genome sequencing (WGS) data for (1) source tracing, (2) early outbreak detection, (3) unraveling transmission dynamics, (4) monitoring drug resistance, (5) detecting cross-border transmission ...

Integrative transnational analysis to dissect tuberculosis transmission events along the migratory route from Africa to Europe.

sequencing (WGS) analysis. Data were compared with those from collections from other European countries receiving migrants from the HA and a strain-specific PCR was applied for a fast searching of common ...

Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations.

Publication Type: Peer reviewed scientific article Authors: Bert Bogaerts; Raf Winand; Julien Van Braekel; Stefan Hoffman; Nancy Roosens; Sigrid C.J. De Keersmaecker; Marchal, Kathleen; Kevin Vanneste Source: Microb Genom, Volume 7, Issue 11 (2021) Manusc ...

Whole-genome-based phylogenomic analysis of the Belgian 2016-2017 influenza A(H3N2) outbreak season allows improved surveillance.

technologies enable a shift to whole-genome sequencing (WGS) for influenza surveillance, but this requires laboratory workflow adaptations and advanced bioinformatics workflows. In this study, 253 influenza ...

The key role of WGS-based surveillance of Listeria monocytogenes in both human and food isolates in outbreak investigations

Publication Type: Scientific poster, presentation or proceeding Authors: An Van den Bossche; Sigrid C.J. De Keersmaecker; Wesley Mattheus; Nancy Roosens; Bert Bogaerts; Kevin Vanneste; Koenraad Van Hoorde; Bavo Verhaegen Source: 26th Conference on Food Mi ...

Exploring the added value of Whole Genome Sequencing in routine and pandemic viral surveillance

Publication Type: Dissertation Authors: Laura Van Poelvoorde Source: (2023) Abstract: Whole genome sequencing (WGS) has opened up a lot of new possibilities for virus surveillance, however, many ...

MALDI-TOF MS, FTIR spectroscopy, PCR and WGS for foodborne outbreak investigation: A case study with Bacillus cereus

Food Microbiology (BSFM), Brussels, Belgium (2023) Keywords: Bacillus cereus cereulide foodborne outbreak investigation FT-IR spectroscopy MALDI-TOF MS PCR WGS Health Topics:  Bacillus cereus Bacillus ...

BSFM 2022- International outbreak of Salmonella Typhimurium linked to a chocolate factory in 2022: Belgian findings

epidemiological, microbiological and traceback investigations. Whole genome sequencing (WGS) analysis of human and food isolates revealed the presence of two clusters:   HC5_296366 (cluster 1) and HC5_298160 ...

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