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Zoekresultaten - 139 results

Whole-Genome Sequencing of Multidrug-Resistant Escherichia coli Strains Harboring the Gene, Isolated from Seawater of the Algiers Coast in Algeria.

Here, we communicate the whole-genome sequencing (WGS) of two colistin-resistant strains, M49 and M78, with genomes sizes of 4,947,168 and 5,178,716 bp, respectively, isolated from seawaters of the ...

Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe.

Organization priority. We previously developed a software tool,, which provided offline species identification and drug resistance predictions for from whole genome sequencing (WGS) data. Performance was ...

Detailed Evaluation of Data Analysis Tools for Subtyping of Bacterial Isolates Based on Whole Genome Sequencing: as a Proof of Concept.

Volume 10 (2019) Abstract: Whole genome sequencing is increasingly recognized as the most informative approach for characterization of bacterial isolates. Success of the routine use of this technology in ...

Comparative Analysis of Whole-Genome Sequence of African Swine Fever Virus Belgium 2018/1.

25, Issue 6 (2019) Abstract: We analyzed the whole-genome sequence of African swine fever virus Belgium 2018/1. The strain fits into the European genotype II (>99.98% identity). The high-coverage ...

Development of a real-time PCR method for the genoserotyping of Salmonella Paratyphi B variant Java.

biochemical tests. Therefore, a quadruplex real-time PCR method, based on the allelic discrimination of molecular markers selected from the scientific literature and from whole genome sequencing data produced ...

Shifting national surveillance of Shigella infections toward geno-serotyping by the development of a tailored Luminex assay and NGS workflow.

respectively. All discrepancies were analyzed with whole-genome sequencing and shown to be related to causative mutations (stop codons, indels, and promoter mutations) in glycosyltransferase genes. This ...

Occurrence and identification of spore-forming bacteria in skim-milk powders

manufacturing environments. Using whole genome sequencing, 16 of 23 isolates identified as  B.  licheniformis  by 16S sequencing were confirmed as  B.  licheniformis, four were identified as  Bacillus ...

Seasonal Genetic Drift of Human Influenza A Virus Quasispecies Revealed by Deep Sequencing

determine the whole genome genetic heterogeneity of the three categories of influenza A viruses that circulated in humans between 2007 and 2012 in France, directly from clinical respiratory specimens. ...

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