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Genomic monitoring of SARS-CoV-2 variants using sentinel SARI hospital surveillance.

patients fulfilling the Belgian SARI definition between January 2020 and December 2022 were sequenced using the ARTIC Network amplicon tiling approach on a MinION platform. Weekly variant of concern (VOC) ...

Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies

concept using Shiga toxin-producing Escherichia coli spiked food samples for a strain-level metagenomics foodborne outbreak investigation method using the MinION and Flongle flow cells from Oxford Nanopore ...

Development of an NGS-Based Workflow for Improved Monitoring of Circulating Plasmids in Support of Risk Assessment of Antimicrobial Resistance Gene Dissemination.

Antibiotics (Basel), Volume 9, Issue 8 (2020) Keywords: Antimicrobial resistance MinION Plasmid sequencing Abstract: Antimicrobial resistance (AMR) is one of the most prominent public health threats. AMR genes ...

Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO.

the feasibility to integrate the described workflow with the MinION Next-Generation-Sequencing (NGS). The MinION sequencing platform can provide long read-lengths and deal with heterogenic DNA ...

Use of next‐generation sequencing in microbial risk assessment

assessment MinION MiSeq nanopore sequencing next generation sequencing Abstract: Despite the ever increase in rigorous control and monitoring measures to assure safe food along the entire farm‐to‐fork chain, ...

ST131 fimH22 Escherichia coli isolate with a blaCMY-2/IncI1/ST12 plasmid obtained from a patient with bloodstream infection: highly similar to E. coli isolates of broiler origin.

European collaborators. The plasmid from ESBL20160056 was sequenced using a MinION Mk1B (Oxford Nanopore Technologies). RESULTS: The E. coli isolate from the Danish patient clustered together with 13 other ...

Characterization of In Vivo acquired resistance of Mycoplasma hyopneumoniae to macrolides and lincosamides.

Publication Type: Peer reviewed scientific article Authors: Stakenborg, Tim; Vicca, Jo; Butaye, Patrick; Maes, Dominiek; Minion, F Chris; Johan Peeters; de Kruif, Aart; Haesebrouck, Freddy Source: ...

Resistance mechanism against fluoroquinolones in Mycoplasma hyopneumoniae field isolates.

Publication Type: Peer reviewed scientific article Authors: Vicca, J; Maes, D; Stakenborg, T; Butaye, P; Minion, F; Johan Peeters; de Kruif, A; Decostere, A; Haesebrouck, F Source: Microb Drug ...

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