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Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates.

C.J. De Keersmaecker Source: Sci Rep, Volume 10, Issue 1 (2020) Keywords: NGS pathogenic E. coli STEC WGS Abstract: Whole genome sequencing (WGS) has proven to be the ultimate tool for bacterial isolate ...

Status and potential of bacterial genomics for public health practice: a scoping review

. The purpose of this scoping review is to identify and characterize the recent literature concerning the application of bacterial pathogen genomics for public health practice and to assess the added ...

Optimization and Application of a Multiplex Digital PCR Assay for the Detection of SARS-CoV-2 Variants of Concern in Belgian Influent Wastewater.

Surveillance de la santé et des maladies Ziekten en gezondheid in kaart brengen Service:  Pathogènes alimentaires Voedselpathogenen Foodborne pathogens Activités transversales en génomique appliquée Transversale ...

BSFM 2022- International outbreak of Salmonella Typhimurium linked to a chocolate factory in 2022: Belgian findings

epidemiological, microbiological and traceback investigations. Whole genome sequencing (WGS) analysis of human and food isolates revealed the presence of two clusters:   HC5_296366 (cluster 1) and HC5_298160 ...

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