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Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak
Publication Type: Peer reviewed scientific article Authors: Buytaers, Florence; Assia Saltykova; Mattheus, Wesley; Verhaegen, Bavo; Roosens, Nancy; Vanneste, Kevin; Laisnez, Valeska; Hammami, Naïma; ...
Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies
Publication Type: Peer reviewed scientific article Authors: Buytaers, Florence; Assia Saltykova; Denayer, Sarah; Verhaegen, Bavo; Vanneste, Kevin; Roosens, Nancy; Piérard, Denis; Marchal, Kathleen; ...
Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study.
Publication Type: Peer reviewed scientific article Authors: Assia Saltykova; Buytaers, Florence; Denayer, Sarah; Verhaegen, Bavo; Piérard, Denis; Roosens, Nancy; Marchal, Kathleen; De Keersmaecker, ...
A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine.
Publication Type: Peer reviewed scientific article Authors: Buytaers, Florence; Assia Saltykova; Denayer, Sarah; Verhaegen, Bavo; Vanneste, Kevin; Roosens, Nancy; Piérard, Denis; Marchal, Kathleen; ...
Development of a real-time PCR method for the genoserotyping of Salmonella Paratyphi B variant Java.
Publication Type: Peer reviewed scientific article Authors: Gand, Mathieu; Mattheus, Wesley; Assia Saltykova; Roosens, Nancy; Dierick, Katelijne; Marchal, Kathleen; De Keersmaecker, Sigrid; ...
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:.
Publication Type: Peer reviewed scientific article Authors: Assia Saltykova; Wuyts, Véronique; Mattheus, Wesley; Bertrand, Sophie; Roosens, Nancy; Marchal, Kathleen; De Keersmaecker, Sigrid Source: ...
Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO.
Publication Type: Peer reviewed scientific article Authors: Marie-Alice Fraiture; Assia, Saltykova; Sigrid De Keersmaecker; Nancy Roosens Source: Sci Rep, Volume 8, Issue 1 (2018) Keywords: DNA ...
Data analysis associated with the use of whole genome sequencing for subtyping of pathogenic microorganisms, Salmonella Typhimurium as a case study
Publication Type: Scientific poster, presentation or proceeding Authors: Assia Saltykova; Wuyts, V.; Bertrand, Sophie; Roosens, Nancy; Marchal, K.; De Keersmaecker, Sigrid Source: Applied ...
MinION sequencing technology to characterize unauthorized GM petunia plants circulating on the European Union market
Publication Type: Peer reviewed scientific article Authors: Fraiture, Marie-Alice; Ujhelyi, Gabriella; Ovesna, Jaroslava; Van Geel, Dirk; De Keersmaecker, Sigrid; Assia Saltykova; Papazova, Nina; ...