Search results - 8 results
Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteriaAbstractBackgroundResultsConclusion
Publication Type: Peer reviewed scientific article Authors: Mathieu Gand; Bram Bloemen; Kevin Vanneste; Nancy Roosens; Sigrid C.J. De Keersmaecker Source: BMC Genomics, Volume 24, Issue 1 (2023) ...
Report on an initial assessment of long-read sequencing for metagenome (community and AMR) analysis (defined community, spiked and real simple and complex matrices) and comparison to current short-read standard
Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Sigrid C.J. De Keersmaecker; Mathieu Gand; Indre Navickaite; Josephine Gruetzke; Lee-Julia Bartsch; Saria ...
Report on the feasibility of using Hi-C sequencing for metagenomics to define the context of AMR genes
Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Sigrid C.J. De Keersmaecker; Josephine Grützke; Carlus Deneke; Jennie Fischer; Lee Julia Bartsch; Bram ...
Optimised long-read sequence bioinformatics tool for the analysis of the resistome and microbial communities
Bosco Rodríguez Matamoros; Nancy Roosens; Sigrid C.J. De Keersmaecker Source: OpenAIRE, Zenodo, p.12 (2022) Accession Number: https://doi.org/10.5281/zenodo.7433258 URL: ...
Report on initial findings of on-site diagnostic tests and IT solutions for human clinical, veterinary and environmental samples for early warning of emerging resistant pathogens
Mathieu Gand; Nancy Roosens; Kevin Vanneste; Sigrid C.J. De Keersmaecker; Quillan Dijkstra; Saria Otani; Michael Brouwer Source: OpenAIRE, Zenodo, p.12 (2022) Accession Number: ...
Detection and identification of authorized and unauthorized GMOs using high-throughput sequencing with the support of a sequence-based GMO database
Publication Type: Peer reviewed scientific article Authors: Assia Saltykova; Julien Van Braekel; N. Papazova; Marie-Alice Fraiture; Deforce, Dieter; Kevin Vanneste; Sigrid C.J. De Keersmaecker ...
Review on current scientific literature and overview of commercially available methods for on-site DNA isolation
Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Manal AbuOun; Indre Navickaite; Sigrid C.J. De Keersmaecker; Mathieu Gand; Søren Persson; Valeria ...
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:.
Publication Type: Peer reviewed scientific article Authors: Assia Saltykova; Wuyts, Véronique; Wesley Mattheus; Sophie Bertrand; Nancy Roosens; Marchal, Kathleen; Sigrid C.J. De Keersmaecker Source: ...