Search results - 4 results
Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study.
Topics: Pathogenic E. coli Food-borne illness Pathogene E. coli E. coli pathogènes Voedseltoxi-infecties (toxi-)infection alimentaire (TIA) Service: Pathogènes alimentaires Voedselpathogenen Foodborne ...
A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine.
human cases, demonstrating the power of shotgun metagenomics for rapid outbreak investigation and source tracking. Health Topics: E. coli pathogènes (toxi-)infection alimentaire (TIA) Pathogene E. coli ...
The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country.
interpreting isolate relationships to outbreaks, and leveraging the true benefit of WGS in outbreak investigation and/or prevention. Health Topics: Pathogenic E. coli Food-borne illness Pathogene E. coli E. ...
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates.
C.J. De Keersmaecker Source: Sci Rep, Volume 10, Issue 1 (2020) Keywords: NGS pathogenic E. coli STEC WGS Abstract: Whole genome sequencing (WGS) has proven to be the ultimate tool for bacterial isolate ...