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First detection of a plasmid located carbapenem resistant blaVIM-1 gene in E. coli isolated from meat products at retail in Belgium in 2015
Publication Type: Peer reviewed scientific article Authors: Garcia Graells, Maria Cristina; Berbers, Johannes Sebastiaan; Verhaegen, Bavo; Vanneste, Kevin; Marchal, Kathleen; Roosens, Nancy; ...
Strategy for the identification of micro-organisms producing food and feed products: Bacteria producing food enzymes as study case
Publication Type: Peer reviewed scientific article Authors: Marie Deckers; Vanneste, Kevin; Winand, Raf; De Keersmaecker, Sigrid; Denayer, Sarah; Heyndrickx, Marc; Deforce, Dieter; Fraiture, ...
Targeting the 16S rRNA gene for bacterial identification in complex mixed samples: comparative evaluation of second (Illumina) and third (Oxford Nanopore Technologies) generation sequencing technologies.
Keersmaecker, Sigrid; Vanneste, Kevin Source: Int J Mol Sci, Volume 21, Issue 1 (2019) Keywords: bacteria DNA, Bacterial High-Throughput Nucleotide Sequencing Nanopores RNA, Ribosomal, 16S Abstract: Rapid, ...
Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: as a Proof-of-Concept.
Sigrid; Roosens, Nancy; Vanneste, Kevin Source: Front Microbiol, Volume 10 (2019) Keywords: national reference center Neisseria meningitidis public health VALIDATION whole-genome sequencing Abstract: ...
Shifting national surveillance of Shigella infections toward geno-serotyping by the development of a tailored Luminex assay and NGS workflow.
Publication Type: Peer reviewed scientific article Authors: Ventola, Eleonora; Bogaerts, Bert; Sigrid C.J. De Keersmaecker; Vanneste, Kevin; Nancy Roosens; Wesley Mattheus; Ceyssens, Pieter-Jan ...
Application of whole genome data for in silico evaluation of primers and probes routinely employed for the detection of viral species by RT-qPCR using dengue virus as a case study.
Publication Type: Peer reviewed scientific article Authors: Vanneste, Kevin; Garlant, Linda; Broeders, Sylvia; Van Gucht, Steven; Roosens, Nancy Source: BMC Bioinformatics, Volume 19, Issue 1 (2018) ...
Development and implementation of a transversal NGS & bioinformatics platform at the Belgian Institute of Public Health: deployment of user-friendly pipelines for routine use
Publication Type: Scientific poster, presentation or proceeding Authors: Vanneste, Kevin; Q. Fu; Bogaerts, Bert; Winand, Raf; Romeu, A.G.; Brown, I.; Van Braekel, Julien; De Keersmaecker, Sigrid; ...
Development and implementation of a transversal NGS & bioinformatics platform at the Belgian Institute of Public Health
Publication Type: Scientific poster, presentation or proceeding Authors: Vanneste, Kevin; Bogaerts, Bert; Q. Fu; Winand, Raf; Romeu, A.G.; Brown, I.; De Keersmaecker, Sigrid; Roosens, Nancy Source: ...
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates.
Publication Type: Peer reviewed scientific article Authors: Nouws, Stéphanie; Bogaerts, Bert; Verhaegen, Bavo; Denayer, Sarah; Piérard, Denis; Marchal, Kathleen; Nancy Roosens; Vanneste, Kevin; De ...
Development of a bioinformatics pipeline for the routine analysis of Influenza whole genome sequencing data
Keersmaecker; Nancy Roosens; Kevin Vanneste Source: European Conference on Computational Biology 2018 conference (http://eccb18.org/). 8 – 12 September, 2018, Athens, Greece (2018) Health Topics: Influenza ...