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Assessing the authenticity and purity of a commercial Bacillus thuringiensis bioinsecticide through whole genome sequencing and metagenomics approaches
Publication Type: Peer reviewed scientific article Authors: Van Laere, Yari; Fraiture, Marie-Alice; Gobbo, Andrea; Sigrid C.J. De Keersmaecker *; Marchal, Kathleen; Nancy Roosens; Vanneste, Kevin Source: Frontiers in Microbiology, Volume 16 (2025) Health ...
Metabarcoding and metagenomics techniques in monitoring airborne pollen
obtained in the previous ones, however they are still little used in aerobiology. This study presents a review and the state of the art of airborne pollen studies based on metabarcoding and metagenomics, as ...
Development of strain-level shotgun metagenomics approaches to detect and characterize microbiological contaminants in the context of food safety
Safety microbiological contaminants shotgun metagenomics Abstract: Foodborne contaminations are a global burden on public health worldwide. For many years, and until recently, the microbial contaminants ...
Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillanceAbstract
Publication Type: Peer reviewed scientific article Authors: Bram Bloemen; Mathieu Gand; Kevin Vanneste; Marchal, Kathleen; Nancy Roosens; Sigrid C.J. De Keersmaecker Source: Scientific Reports, Volume 13, Issue 1 (2023) Health Topics: Health and environm ...
Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteriaAbstractBackgroundResultsConclusion
Keywords: DNA extraction HMW DNA Long-read Metagenomics Method evaluation nanopore Abstract: Background: Oxford Nanopore Technologies (ONT) offers an accessible platform for long-read sequencing, which ...
Report on an initial assessment of long-read sequencing for metagenome (community and AMR) analysis (defined community, spiked and real simple and complex matrices) and comparison to current short-read standard
URL: https://doi.org/10.5281/zenodo.7429361 Keywords: Antimicrobial resistance Bacterial community Long read metagenomics Metagenome Health Topics: Health and disease monitoring Food consumption and ...
Report on the feasibility of using Hi-C sequencing for metagenomics to define the context of AMR genes
https://zenodo.org/record/7433351#.Y7aj4HbMKM8 Keywords: Antimicrobial resistance Hi-C metagenomics Health Topics: Antimicrobial resistance (AMR) Food consumption and food safety Animal health Health and environment Résistance aux ...
Optimised long-read sequence bioinformatics tool for the analysis of the resistome and microbial communities
https://doi.org/10.5281/zenodo.7433258 Keywords: Antimicrobial resistance bioinformatics Long read metagenomic sequencing Microbial community Resistome Health Topics: Antimicrobial resistance (AMR) Food consumption and food safety ...
Report on initial findings of on-site diagnostic tests and IT solutions for human clinical, veterinary and environmental samples for early warning of emerging resistant pathogens
https://doi.org/10.5281/zenodo.7433281 URL: https://doi.org/10.5281/zenodo.7433281 Keywords: Long read metagenomics Metagenome On-site metagenomics Health Topics: Antimicrobial resistance (AMR) Food consumption and food safety Animal ...
Review on current scientific literature and overview of commercially available methods for on-site DNA isolation
https://doi.org/10.5281/zenodo.4724557 Keywords: AMR Antimicrobial resistance DNA isolation literature review metagenomic On-site Health Topics: Health and disease monitoring Food consumption and food safety Animal health Health and ...