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Use of a Whole Genome Sequencing-based approach for Mycobacterium tuberculosis surveillance in Europe in 2017-2019: an ECDC pilot study.
Dick van Soolingen; Marieke J van der Werf; Daniela Maria Cirillo; ECDC molecular surveillance project participants Source: Eur Respir J (2020) Abstract: Whole genome sequencing (WGS) can be used for ...
NAuRA: Genomic Tool to Identify Staphylococcal Enterotoxins in Strains Responsible for FoodBorne Outbreaks.
presence of 27 SE s genes in just one analysis- and create a database of allelic data and protein variants for harmonizing analyses. This tool uses genome assembly data and the 27 protein sequences of SE s. ...
Development of a genoserotyping system for the identification of Salmonella serotypes
detection of molecular markers or on the analysis of sequencing data, are described in the scientific literature. Based on a critical review of some of these techniques, the Multiplex Oligonucleotide ...
Lineages Within the Trichophyton rubrum Complex.
within the complex each with a distinct morphology and identifiable via MALDI- TOF MS: T. rubrum, T. violaceum, T. soudanense and the T. yaoundei clade. However, ITS and Bt2 sequencing data could not ...
Species Distinction in the Trichophyton rubrum Complex.
species within the complex, molecular, phenotypic, and physiological characteristics were combined to reestablish a natural species concept. Three groups,,, and, could be distinguished based on the sequence ...
Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: as a Proof-of-Concept.
being a well-established research method, the use of whole-genome sequencing (WGS) for routine molecular typing and pathogen characterization remains a substantial challenge due to the required ...
Bigger and Better? Representativeness of the Influenza A Surveillance Using One Consolidated Clinical Microbiology Laboratory Data Set as Compared to the Belgian Sentinel Network of Laboratories.
LHUB- ULB data to the national and international data for the same time periods, both on epidemiological and molecular grounds. Notably, the effectiveness of the LHUB- ULB surveillance remains partially ...
Development of a real-time PCR method for the genoserotyping of Salmonella Paratyphi B variant Java.
biochemical tests. Therefore, a quadruplex real-time PCR method, based on the allelic discrimination of molecular markers selected from the scientific literature and from whole genome sequencing data produced ...
Roadbook for the implementation of next-generation sequencing in clinical practice in oncology and hemato-oncology in Belgium.
Doren; Anouk Waeytens; Marc Van den Bulcke Source: Arch Public Health, Volume 76 (2018) Abstract: In the field of oncology research, next-generation sequencing has contributed significantly to the ...
Orthogonal typing methods identify genetic diversity among Belgian Campylobacter jejuni strains isolated over a decade from poultry and cases of sporadic human illness.
Campylobacter jejuni Chickens Gastroenteritis Genetic Variation Humans Molecular Epidemiology Multilocus Sequence Typing polymerase chain reaction Poultry Abstract: Campylobacter jejuni is a zoonotic pathogen ...