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Detailed Evaluation of Data Analysis Tools for Subtyping of Bacterial Isolates Based on Whole Genome Sequencing: as a Proof of Concept.
some level dependent on the reference genome used. Interestingly, the use of recombination-filtering software generally reduced the similarity between the gene-by-gene and SNP-based methodologies for ...
Estimating the Reliability of Low-Abundant Signals and Limited Replicate Measurements through MS2 Peak Area in SWATH
Nevertheless, reliable quantification of low-abundant signals in complex samples remains challenging, as recently illustrated in a multicenter benchmark study of different label-free software tools. Here, the ...
Comparison of matrix-assisted laser desorption ionization time of flight mass spectrometry (MALDI-TOF MS) systems for the identification of moulds in the routine microbiology laboratory.
via sequencing. Strains were then identified using the VMS v3.0, the MLT, and the MSI software applied on MLT spectra. Rates of correct identifications to the species, to the complex, and to the genus ...
Coatings in food contact materials: Potential source of genotoxic contaminants?
two structure-activity relationship (SAR) software programs. For substances yielding structural alerts in both models, genotoxicity data were collected from previous European evaluations in a non- FCM ...
Validation of a particle tracking analysis method for the size determination of nano- and microparticles.
colloidal silica and polystyrene latex reference materials with particle sizes in the range of 20 nm to 200 nm were analysed with NS500 and LM10- HSBF NanoSight instruments and video analysis software NTA 2.3 ...
(Q)SAR tools for priority setting: A case study with printed paper and board food contact material substances.
Chemicals Paper Quantitative Structure-Activity Relationship SOFTWARE Abstract: Over the last years, more stringent safety requirements for an increasing number of chemicals across many regulatory fields ...
Protocol of the Belgian food consumption survey 2014: objectives, design and methods.
two non-consecutive 24-h dietary recalls (using the GloboDiet® software). In children food intake was collected with two non-consecutive one-day food diaries followed by a completion interview with ...
ELM 2016--data update and new functionality of the eukaryotic linear motif resource.
Norman E Davey; Francesca Diella; Toby J Gibson Source: Nucleic Acids Res, Volume 44, Issue D1 (2016) Keywords: Amino Acid Motifs Databases, Protein Eukaryota Internet Signal Transduction SOFTWARE ...
The accuracy of guided surgery via mucosa-supported stereolithographic surgical templates in the hands of surgeons with little experience.
aged Mouth Mucosa Prospective Studies SOFTWARE Surgery, Computer-Assisted Treatment Outcome Abstract: OBJECTIVES: This prospective study analyzed the accuracy of implant placement with mucosa-supported ...
Whole Genome Sequence Analysis of Salmonella Enteritidis PT4 Outbreaks from a National Reference Laboratory's Viewpoint.
Serotyping Service Shigella SOFTWARE STANDARD study Subtyping System Systems technology TESTING time Type Universities university whole whole genome Abstract: INTRODUCTION: In April and May 2014, two suspected ...