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Development of strain-level shotgun metagenomics approaches to detect and characterize microbiological contaminants in the context of food safety
retrieved when two strains of the same species were present. The same protocol was then followed to investigate a real Salmonella foodborne outbreak. Two food samples were investigated and the Salmonella ...
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:.
Salmonella; Salmonella enterica; Salmonella typhimurium; SNP; subtyping; whole genome sequencing Abstract: Whole genome sequencing represents a promising new technology for subtyping of bacterial pathogens. ...