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Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study.

https://www.sciensano.be/en/biblio/strain-level-metagenomic-data-analysis-enriched-vitro-and-silico-spiked-food-samples-paving-way

Publication Type: Peer reviewed scientific article Authors: Assia Saltykova; Florence E Buytaers; Sarah Denayer; Bavo Verhaegen; Piérard, Denis; Nancy Roosens; Marchal, Kathleen; Sigrid C.J. De Keersmaecker Source: Int J Mol Sci, Volume 21, Issue 16 (2020 ...

A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine.

https://www.sciensano.be/en/biblio/a-practical-method-implement-strain-level-metagenomics-based-foodborne-outbreak-investigation-and

Publication Type: Peer reviewed scientific article Authors: Florence E Buytaers; Assia Saltykova; Sarah Denayer; Bavo Verhaegen; Kevin Vanneste; Nancy Roosens; Piérard, Denis; Marchal, Kathleen; Sigrid C.J. De Keersmaecker Source: Microorganisms, Volume 8 ...

The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country.

https://www.sciensano.be/en/biblio/benefits-whole-genome-sequencing-foodborne-outbreak-investigation-perspective-a-national-reference

Publication Type: Peer reviewed scientific article Authors: Stéphanie Nouws; Bert Bogaerts; Bavo Verhaegen; Sarah Denayer; Florence Crombé; Klara De Rauw; Denis Piérard; Kathleen Marchal; Kevin Vanneste; Nancy Roosens; Sigrid C.J. De Keersmaecker Source: ...

Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates.

https://www.sciensano.be/en/biblio/impact-dna-extraction-whole-genome-sequencing-analysis-characterization-and-relatedness-shiga-toxin

Publication Type: Peer reviewed scientific article Authors: Stéphanie Nouws; Bert Bogaerts; Bavo Verhaegen; Sarah Denayer; Piérard, Denis; Marchal, Kathleen; Nancy Roosens; Kevin Vanneste; Sigrid C.J. De Keersmaecker Source: Sci Rep, Volume 10, Issue 1 (2 ...

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