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Strain-level characterization without culture enrichment? Easing and accelerating outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling
metagenomics and adaptive sampling using other databases. It allowed strain-level analysis of foodborne outbreaks without the need for culture enrichment, thereby enabling faster investigations and facilitating ...
Keeping our food safe: the use of sequencing technologies for foodborne outbreak investigations
Publication Type: Scientific poster, presentation or proceeding Authors: Florence E Buytaers Source: BRIAS, BRIAS, Issue ULB, Brussels, Belgium (2023) Keywords: Food Safety foodborne outbreaks ...
Development of strain-level shotgun metagenomics approaches to detect and characterize microbiological contaminants in the context of food safety
retrieved when two strains of the same species were present. The same protocol was then followed to investigate a real Salmonella foodborne outbreak. Two food samples were investigated and the Salmonella ...
Shotgun metagenomics as a ONE Health tool for better protecting human health
conventional methods in e.g. the field of pathogen detection/characterization along the food chain, starting from the food production environment (including detection of AMR genes) until foodborne outbreak ...
Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak
Salmonella SNP analysis strain-level Abstract: Food-borne outbreak investigation currently relies on the time-consuming and challenging bacterial isolation from food, to be able to link food-derived strains to ...