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The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
allows researchers without a specific training in bioinformatics to perform robust phylogenomic analyses. Hence, it facilitates all steps from genome downloading and quality assessment, including genomic ...
Targeted Whole Genome Sequencing of the Capripoxvirus Genome from Clinical Tissue Samples and Lyophilized Vaccine Batches.
of tiled amplicons. The resulting amplicons can be sequenced on all currently available high-throughput sequencing platforms. As an example, we have included a detailed protocol for performing nanopore ...
The strategic change of the API fingerprint programme: from verification of authenticity of API sources to identifying potential quality issues
North-Macedonia (2024) Keywords: API GEON Quality Control Abstract: Since its creation the API-surveillance programme, performed under the hospices of the API-working group, focused a lot on the authenticity of API ...
A One-Health approach to monitoring antimicrobial consumption in Belgium 2012-2021
were performed to assess the correlation between AMC and time. Results Significant reductions in total AMC (mg/kg estimated biomass) were observed over time in both humans and animals. Notably, in ...
Prevalence of Healthcare-Associated Infections in Belgian Acute Care Hospitals in 2022: Results of ECDC Point Prevalence Survey
the ECDC PPS was repeated in Belgian acute care hospitals. Methods: Data collection was performed from September to November 2022, following the ECDC protocol (version 6.0) at hospital/ward/patient ...
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
promises much lower error rates than the R9 chemistry. However, limited information is available on its performance for bacterial single-nucleotide polymorphism (SNP)-based outbreak investigation. We present ...
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
promises much lower error rates than the R9 chemistry. However, limited information is available on its performance for bacterial single-nucleotide polymorphism (SNP)-based outbreak investigation. We present ...
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
promises much lower error rates than the R9 chemistry. However, limited information is available on its performance for bacterial single-nucleotide polymorphism (SNP)-based outbreak investigation. We present ...
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
available on its performance for bacterial single-nucleotide polymorphism (SNP)-based outbreak investigation. We present an open-source workflow, Prokaryotic Awesome variant Calling Utility (PACU) ...
Clinical performance of the novel full-genotyping OncoPredict HPV Quantitative Typing assay using the VALGENT framework.
acid extraction and PCR inhibition are included in the assay. Clinical performance of OncoPredict HPV QT test was assessed as part of the “Validation of HPV Genotyping Tests” (VALGENT-2) framework, ...