Search results - 61 results
Galaxy @Sciensano: a comprehensive bioinformatics portal for genomics-based microbial typing, characterization, and outbreak detection.
Milis; Nathalie Goeders; Sigrid C.J. De Keersmaecker; Nancy Roosens; Raf Winand; Kevin Vanneste Source: BMC Genomics, Volume 26, Issue 1 (2025) Keywords: Computational Biology Disease Outbreaks Genome ...
Targeted Whole Genome Sequencing of the Capripoxvirus Genome from Clinical Tissue Samples and Lyophilized Vaccine Batches.
achieved by whole-genome sequencing. In this chapter, we describe a robust, cost-effective, and widely applicable protocol for reconstructing (nearly) complete CaPV genomes directly from clinical samples or ...
Antimicrobial resistance in ESBL and indicator E. coli, Campylobacter spp.,Salmonella spp., methicillin-resistant Staphylococcus aureus (MRSA) and Enterococcus faecalis and faecium isolated from food and food-producing animals (primary production) in 2023
resistance levels are lower in C. jejuni than in C. coli. In 2023, Salmonella spp. recovered from food matrices have been analysed by whole genome sequencing (WGS). The highest levels of predicted ...
High pathogenic avian influenza A(H5) viruses of clade 2.3.4.4b in Europe-Why trends of virus evolution are more difficult to predict.
the largest epidemics recorded so far, this clade has begun to circulate endemically in European wild bird populations. This study used the complete genomes of 1,956 European HPAI A(H5N x) viruses to ...
be.Prepared: Transition to timely genomic resistance surveillance
World One Health, AMR Conference of the Belgian Presidency, One World One Health, Brussels, Belgium (2024) Keywords: AMR Infectious diseases Surveillance Whole genome sequencing (WGS) Abstract: In recent ...
Complete genome reconstruction of the global and European regional dispersal history of the lumpy skin disease virus.
circulation of vaccine-like recombinants, and the use of vaccines. The slow molecular evolution of its DNA genome limits the utility of genetic variation for accurate tracing based on evolutionary analyses, but ...
Complete genome reconstruction of the global and European regional dispersal history of the lumpy skin disease virus.
circulation of vaccine-like recombinants, and the use of vaccines. The slow molecular evolution of its DNA genome limits the utility of genetic variation for accurate tracing based on evolutionary analyses, but ...
RNA sequencing of avian paramyxovirus (Paramyxoviridae, Avulavirinae) isolates from wild mallards in Belgium, 2021: complete genomes and coinfections.
RNA sequencing to characterize three Avulavirinae isolates from pooled samples obtained from wild mallards in Belgium in 2021. The complete genome sequences of two avian Orthoavulavirus-1 (AOAV-1) ...
Transforming Shiga toxin-producing surveillance through whole genome sequencing in food safety practices.
Nancy Roosens *; Sigrid C.J. De Keersmaecker * Source: Front Microbiol, Volume 14 (2023) Keywords: Food Safety implementation Shiga toxin-producing Escherichia coli Surveillance whole genome sequencing ...
A global genomic analysis of Salmonella Concord reveals lineages with high antimicrobial resistance in Ethiopia.
acquired resistance to most antimicrobials used for treating invasive Salmonella infections in low- and middle-income countries. By reconstructing complete genomes for 10 representative strains, we ...