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Strengthening Genomic Sequencing Capacities: be.Prepared
Outbreak Preparedness and Response, Issue European Commission, Brussels, Belgium (2025) Keywords: genomic surveillance outbreak preparedness Whole genome sequencing (WGS) Health Topics: Health and disease ...
Salmonella spp. as a be.Prepared Case Study for Integrating Microbial Genomic and Health Data in Public Health Surveillance
architecture supports the central collection, processing, and linking of laboratory, clinical, epidemiological data with microbial genomic indicator data derived from Whole Genome Sequencing (WGS ...
be.Prepared: Setting up a cloud-based bioinformatics platform and coupled NRC usability platform for integrated genomic-epidemiological analysis at a national level
Preparedness Architecture for Infectious Diseases) is an overarching Belgian infrastructure that facilitates the integration of health and biological data from various sources with whole genome sequencing (WGS ...
Molecular and WGS-based characterization of invasive Neisseria meningitidis isolates collected in Belgium (2016-2022) and MenB-FHbp vaccine coverage estimation of serogroup B.
used for serogroup determination and whole genome sequencing (WGS) was used to further characterize these strains. The observed serogroups were: MenB (n = 281), MenY (n = 95), MenW (n = 83), MenC ...
Galaxy @Sciensano: a comprehensive bioinformatics portal for genomics-based microbial typing, characterization, and outbreak detection.
, Bacterial Genomics Humans SOFTWARE whole genome sequencing Abstract: The influx of whole genome sequencing (WGS) data in the public health and clinical diagnostic sectors has created a need for data analysis ...
Sheeppox virus genome sequences from the European outbreaks in Spain, Bulgaria, and Greece in 2022-2024.
whole-genome sequences (WGS s) were determined from samples collected during these outbreaks and analyzed in the context of all other published WGS s. Sheeppox virus strains can be divided in two, or possibly ...
Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing
whole-genome sequencing (WGS) and subsequently characterized in terms of sequence type (ST), virulence gene profile, antimicrobial resistance (AMR) gene profile, plasmid content, and phylogenomic relationships. ...
Genomic comparison between and and analysis of peptide-based biomarkers for serodiagnosis.
whole genome sequencing (WGS) was used to search for protein-coding genes to distinguish from. In addition, the population structure of the available genomic WGS datasets is described, including three ...
Antimicrobial resistance in ESBL and indicator E. coli, Campylobacter spp.,Salmonella spp., methicillin-resistant Staphylococcus aureus (MRSA) and Enterococcus faecalis and faecium isolated from food and food-producing animals (primary production) in 2023
resistance levels are lower in C. jejuni than in C. coli. In 2023, Salmonella spp. recovered from food matrices have been analysed by whole genome sequencing (WGS). The highest levels of predicted ...
Azithromycin resistance in Escherichia coli and Salmonella from food-producing animals and meat in Europe.
Plasmids Salmonella Swine whole genome sequencing Abstract: OBJECTIVES: To characterize the genetic basis of azithromycin resistance in Escherichia coli and Salmonella collected within the EU harmonized ...