Search results - 18 results
Antimicrobial resistance in ESBL and indicator E. coli, Campylobacter spp.,Salmonella spp., methicillin-resistant Staphylococcus aureus (MRSA) and Enterococcus faecalis and faecium isolated from food and food-producing animals (primary production) in 2023
resistance levels are lower in C. jejuni than in C. coli. In 2023, Salmonella spp. recovered from food matrices have been analysed by whole genome sequencing (WGS). The highest levels of predicted ...
Azithromycin resistance in Escherichia coli and Salmonella from food-producing animals and meat in Europe.
Plasmids Salmonella Swine whole genome sequencing Abstract: OBJECTIVES: To characterize the genetic basis of azithromycin resistance in Escherichia coli and Salmonella collected within the EU harmonized ...
Genomic Insights into Methicillin-Resistant Staphylococcus aureus spa type t899 Isolates Belonging to Different Sequence Types
Publication Type: Peer reviewed scientific article Authors: Henok Ayale Tegegne; Ivana Koláčková; Martina Florianová; P Wattiau; Tereza Gelbíčová; Cécile Boland; Jean-Yves Madec; Marisa Haenni; Renata Karpíšková Source: Applied and Environmental Microbiol ...
Report on the feasibility of using Hi-C sequencing for metagenomics to define the context of AMR genes
Activités transversales en génomique appliquée Transversale activiteiten in toegepaste genomica Transversal activities in applied genomics Manuscript versions: DOI: https://doi.org/10.5281/zenodo.7433351 ...
Optimised long-read sequence bioinformatics tool for the analysis of the resistome and microbial communities
Santé et environnement Gezondheid en milieu Service: Activités transversales en génomique appliquée Transversale activiteiten in toegepaste genomica Transversal activities in applied genomics Manuscript ...
Report on initial findings of on-site diagnostic tests and IT solutions for human clinical, veterinary and environmental samples for early warning of emerging resistant pathogens
et environnement Gezondheid en milieu Service: Activités transversales en génomique appliquée Transversale activiteiten in toegepaste genomica Transversal activities in applied genomics Manuscript ...
Genomic epidemiology of emerging ESBL-producing Kentucky in Europe.
Ceyssens; Maria Louise Borg; Marie Chattaway; Jacquelyn McCormick; Timothy J Dallman; Eelco Franz Source: Emerg Microbes Infect, Volume 9, Issue 1 (2020) Keywords: ESBL Genomics Salmonella Kentucky Abstract: ...
Deep amplicon sequencing for culture-free prediction of susceptibility or resistance to 13 anti-tuberculous drugs.
J (2020) Abstract: Conventional molecular tests for detecting complex (MTBC) drug resistance on clinical samples cover a limited set of mutations. Whole genome sequencing (WGS) typically requires culture. ...
Development of an NGS-Based Workflow for Improved Monitoring of Circulating Plasmids in Support of Risk Assessment of Antimicrobial Resistance Gene Dissemination.
view of AMR gene localization, i.e., chromosomal or on a plasmid. Whole-genome and plasmid DNA extraction methods were compared, as were assemblies consisting of short reads (Illumina MiSeq), long reads ...
First detection of a plasmid located carbapenem resistant blaVIM-1 gene in E. coli isolated from meat products at retail in Belgium in 2015
Activités transversales en génomique appliquée Transversale activiteiten in toegepaste genomica Transversal activities in applied genomics Pathogènes alimentaires Voedselpathogenen Foodborne pathogens ...