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be.Prepared: Setting up a cloud-based bioinformatics platform and coupled NRC usability platform for integrated genomic-epidemiological analysis at a national level
pathogen-specific pipelines to obtain high-quality indicators (cgMLST profiles, AMR genes, serotypes etc.) which are stored in a genomic database. The platform performs periodic reanalyses of existing datasets when ...
Molecular and WGS-based characterization of invasive Neisseria meningitidis isolates collected in Belgium (2016-2022) and MenB-FHbp vaccine coverage estimation of serogroup B.
by the European Centre for Disease Prevention and Control (ECDC). As a major cause of IMD, genomic surveillance of circulating MenB strains and assessment of the potential impact of vaccination ...
Genetic relatedness of Staphylococcus aureus isolates within food outbreaks by single nucleotide polymorphisms.
Food Poisoning Staphylococcal Infections Staphylococcus aureus whole genome sequencing Abstract: Investigation of bacterial food outbreaks by whole genome sequencing can rely on the inspection of the ...
Galaxy @Sciensano: a comprehensive bioinformatics portal for genomics-based microbial typing, characterization, and outbreak detection.
pathogens with active genomic surveillance programs, and clinical relevance, such as Escherichia coli, Listeria monocytogenes, Salmonella spp. and Mycobacterium tuberculosis. These tools and pipelines utilize ...
An interlaboratory proficiency test using metagenomic sequencing as a diagnostic tool for the detection of RNA viruses in swine fecal material.
Biology Feces Genome, Viral High-Throughput Nucleotide Sequencing Laboratory Proficiency Testing Metagenome Metagenomics RNA Viruses RNA, Viral Swine Swine Diseases Abstract: UNLABELLED: Metagenomic shotgun ...
FT-IR spectroscopy as a rapid method for Salmonella spp. typing
Brussels, Belgium (2024) Keywords: foodborne outbreak FT-IR spectroscopy Abstract: Introduction Salmonella is a major foodborne pathogen, leading cause of non-typhoidal human salmonellosis. Eggs and egg ...
Immunogenicity and protective efficacy of a multivalent herpesvirus vectored vaccine against H9N2 low pathogenic avian influenza in chicken.
of recombinant herpesvirus of turkey, expressing the H9 hemagglutinin gene from low pathogenic avian influenza virus (LPAIV) H9N2 and the avian orthoavulavirus-1 (AOAV-1) (commonly known as Newcastle ...
Exploring grants & actions for advancing laborabory and digital capacities for health emergency preparedness and response: be.Prepared
initiatives have intensified efforts to strengthen national infrastructures for whole genome sequencing (WGS) of pathogens in response to the urgent needs of the COVID-19 pandemic. This pivotal experience ...
The ambitious plan to integrate genomics and patient data in the surveillance of infectious disease and AMR in Belgium: Experiences from be.Prepared
intended to integrate pathogen and patient data from clinical labs from the moment of validation, with genome data from the reference labs and available patient data, all the way to reporting to regional and ...
BSFM 2023- L. monocytogenes in Plant-Based Foods: insights from of a recent foodborne outbreak linked to vegan alternative to cheese
following ISO 11290 – 1 and – 2. A human strain was collected at the NRC Listeria. All isolated strains underwent serotyping for further characterisation at the NRC Listeria, and Whole Genome Sequencing (WGS) ...