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Résultats de la recherche - 10 results
Epidemiological Dynamics of Foot-and-Mouth Disease in the Horn of Africa: The Role of Virus Diversity and Animal Movement.
inter-typic recombination, as well as the quasi-species nature of the virus. This paper describes the epidemiological dynamics of foot-and-mouth disease in the Horn of Africa with regard to the serotypes and ...
Strategy and Performance Evaluation of Low-Frequency Variant Calling for SARS-CoV-2 Using Targeted Deep Illumina Sequencing
Vanneste Source: Frontiers in Microbiology, Volume 12 (2021) Keywords: co-infection Illumina NGS quasispecies SARS-CoV-2 variant of concern wastewater surveillance Abstract: The ongoing COVID-19 pandemic, ...
Seasonal Genetic Drift of Human Influenza A Virus Quasispecies Revealed by Deep Sequencing
documented by consensus sequencing data. However, like other RNA viruses, influenza A viruses exist as a population of diverse, albeit related, viruses, or quasispecies. Interest in this quasispecies nature ...
Next-generation sequencing shows West Nile virus quasispecies diversification after a single passage in a carrion crow (Corvus corone) in vivo infection model.
Analysis, DNA West Nile Fever West Nile virus Abstract: West Nile virus (WNV) occurs as a population of genetic variants (quasispecies) infecting a single animal. Previous low-resolution viral genetic ...
Next-generation sequencing in veterinary medicine: how can the massive amount of information arising from high-throughput technologies improve diagnosis, control, and management of infectious diseases?
communities to molecular epidemiology and evolution of viral quasispecies. Moreover, high-throughput technologies now allow detailed studies of host-pathogen interactions at the level of their genomes ...
Fine quantification of avian influenza H5N1 escape mutant quasispecies populations using mutation-specific real-time PCR.
Analysis, RNA Species Specificity Virus Cultivation Abstract: Influenza viruses have a rapid replication cycle, using enzymes without proofreading capacity and generating multiple virus quasispecies during ...
Quasispecies nature of an unusual avian paramyxovirus type-1 isolated from pigeons.
isolated from sick, unvaccinated pigeons, it was not grouped with pigeon variants regarding its antigenic and genetic characterisation. We analysed its quasispecies nature by cloning and sequencing parts of ...
Molecular study of the quasispecies evolution of a typical pigeon paramyxovirus type 1 after serial passages in pigeons by contact.
Evolution, Molecular Genes, Viral Kidney Molecular Sequence Data Newcastle disease virus polymerase chain reaction Sequence Alignment Sequence Homology, Nucleic Acid Serial Passage Abstract: The quasispecies ...
Exploring the added value of Whole Genome Sequencing in routine and pandemic viral surveillance
opportunity to sequence patient-derived virus population at sufficiently high depths to identify low-frequency variants present in a viral quasispecies. However, due to experimental errors from the PCR and NGS, ...
A general approach to identify low-frequency variants within influenza samples collected during routine surveillance.
exhibit considerable diversity between hosts. Additionally, different quasispecies can be found within the same host. High-throughput sequencing technologies can be used to sequence a patient-derived virus ...