Résultats de la recherche - 29 results

The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics

collections Cyanobacteria Genomics Gloeobacterales Metagenomics nextflow phylogenomics Phylogeny Singularity containers Workflow Abstract: Background: Microbial culture collections play a key role in taxonomy ...

Strain-level characterization without culture enrichment? Easing and accelerating outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

Keersmaecker Source: BSFM, BSFM, Brussels, Belgium (2023) Keywords: adaptive sampling nanopore outbreak investigation shotgun metagenomics Abstract: Introduction Traditionally, the investigation of suspect food ...

RNA sequencing of avian paramyxovirus (Paramyxoviridae, Avulavirinae) isolates from wild mallards in Belgium, 2021: complete genomes and coinfections.

genome segments of an AIV of subtype H11N9 could be de novo assembled from the sequencing data. Besides an AIV coinfection, RNA metagenomic data from the APMV-4 isolate also showed evidence of ...

Keeping our food safe: the use of sequencing technologies for foodborne outbreak investigations

sequencing technologies Abstract: Keeping our food safe:  how the sequencing technologies can be used for foodborne outbreak investigations (WGS and metagenomics) Health Topics:  Food consumption and food ...

Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillanceAbstract

Publication Type: Peer reviewed scientific article Authors: Bram Bloemen; Mathieu Gand; Kevin Vanneste; Marchal, Kathleen; Nancy Roosens; Sigrid C.J. De Keersmaecker Source: Scientific Reports, Volume 13, Issue 1 (2023) Health Topics:  Health and environm ...

Metagenomic Characterization of Multiple Genetically Modified Bacillus Contaminations in Commercial Microbial Fermentation Products

12, Issue 12 (2022) Keywords: Bacillus food enzyme genetically modified microorganisms (GMM) hybrid genome assembly metagenomic shotgun sequencing Abstract: Genetically modified microorganisms (GMM) are ...

Shotgun metagenomics for strain-level food-borne outbreak investigation

Publication Type: Scientific poster, presentation or proceeding Authors: Florence E Buytaers Source: FoodMicro (2022) Service:  Activités transversales en génomique appliquée Transversale activiteiten in toegepaste genomica Transversal activities in appli ...

A shotgun metagenomics approach to detect and characterize unauthorized genetically modified microorganisms in microbial fermentation products

Publication Type: Scientific poster, presentation or proceeding Authors: Florence E Buytaers; Marie-Alice Fraiture; Bas Berbers; Els Vandermassen; Stefan Hoffman; N. Papazova; Kevin Vanneste; Kathleen Marchal; Nancy Roosens; Sigrid C.J. De Keersmaecker So ...

Shotgun metagenomics as a ONE Health tool for better protecting human health

identify all biological material in a sample without a priori knowing what to look for, could transform the way specific key public health questions can be addressed, in a ONE Health context. Metagenomics is ...

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