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be.Prepared: Setting up a cloud-based bioinformatics platform and coupled NRC usability platform for integrated genomic-epidemiological analysis at a national level
Applied Bioinformatics and Public Health Microbiology, Hixton, UK (0) Keywords: bioinformatics cloud-based epidemiology genomic surveillance whole genome sequencing Abstract: be.Prepared (Belgian ...
The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
were studied, resulting in the GEN- ERA toolbox. The latter is a unified cluster of bioinformatic workflows dedicated to both bacteria and small eukaryotes (e.g., yeasts). Findings: This public toolbox ...
Galaxy @Sciensano: a comprehensive bioinformatics portal for genomics-based microbial typing, characterization, and outbreak detection.
methods and bioinformatics expertise, which can be a bottleneck for many laboratories. At Sciensano, the Belgian national public health institute, an intuitive and user-friendly bioinformatics tool portal ...
An interlaboratory proficiency test using metagenomic sequencing as a diagnostic tool for the detection of RNA viruses in swine fecal material.
material and the extracted RNA. While different mNGS workflows for the generation of mNGS data were used in the different laboratories, the bioinformatic analysis was standardized using a metagenomic read ...
be.Prepared to increase Belgian integration of health data as a way of strengthening preparedness for infectious diseases
Prepared architecture the central bioinformatics BioIT platform, the central National Reference Centre (NRC) platform and the healthdata.be platform. Health Topics: Health and disease monitoring ...
Exploring grants & actions for advancing laborabory and digital capacities for health emergency preparedness and response: be.Prepared
integrates and links pathogen and health data using a variety of state-of-the-art platforms, including a dynamic platform for data linkage and a central cloud-based bioinformatics platform. Health Topics: ...
The ambitious plan to integrate genomics and patient data in the surveillance of infectious disease and AMR in Belgium: Experiences from be.Prepared
international health actors. Central to the system is a cloud-based bioinformatics platform with locally implemented versions of BigsDB and MicroReact. Health Topics: Antibiotica Antibiotiques Antibiotics ...
be.Prepared: An architecture to increase Belgian integration of health data as a way of strengthening preparedness for infectious diseases
Philippe Herman; Nancy Roosens; Karin De Ridder; Koen Blot; Raf Winand; Kevin Vanneste; Heleen Masset Source: The Belgian Presidency of the Council of the European Union (2024) Keywords: bioinformatics tools ...
Whole-genome sequencing-based phylogenomic investigation of unexpected Bacillus cereus contaminations collected from commercial vitamin B2 food and feed additives sold on the Belgian market
Keersmaecker; Nancy Roosens; Kevin Vanneste Source: Applied Bioinformatics and Public Health Microbiology, Wellcome Genome Campus, Hinxton, OK (2023) Service: Activités transversales en génomique appliquée ...
Towards a new (H)ERA: Developments to strengthen infectious diseases surveillance and pandemic preparedness
Diseases (2023) Keywords: bioinformatics Infectious diseases national reference centres for human microbiology Pandemic preparedness public health Surveillance Abstract: In order to achieve pandemic ...