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Filters: Author is Kevin Vanneste
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.,
, J Clin Microbiol, 2024 Mar 05, (2024)
Pilot market surveillance of GMM contaminations in alpha-amylase food enzyme products: A detection strategy strengthened by a newly developed qPCR method targeting a GM Bacillus licheniformis producing alpha-amylase,
, Food Chemistry: Molecular Sciences, Jan-07-2024, Volume 8, (2024)
Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteriaAbstractBackgroundResultsConclusion,
, BMC Genomics, Jan-12-2023, Volume 24, Issue 1, (2023)
Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillanceAbstract,
, Scientific Reports, Jan-12-2023, Volume 13, Issue 1, (2023)
A new open strategy for impurity surveillance of commercial microbial fermentation food products,
, Brussels, Belgium, (2023)
Novel threats- State of the art of synthetic biology,
, Munich, Germany, (2023)
Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing,
, Frontiers in Microbiology, Sep-06-2024, Volume 14, (2023)
Strain-level characterization without culture enrichment? Easing and accelerating outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling,
, BSFM, 2023-10-13, Brussels, Belgium, (2023)
Targeted High-Throughput Sequencing Enables the Detection of Single Nucleotide Variations in CRISPR/Cas9 Gene-Edited Organisms,
, Foods, Jan-02-2023, Volume 12, Issue 3, (2023)
Transforming Shiga toxin-producing surveillance through whole genome sequencing in food safety practices.,
, Front Microbiol, 2023, Volume 14, (2023)
Using a combination of short and long read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum-beta-lactamases (ESBL) in clinical Shigella and Salmonella isolates in Belgium,
, Microbial Genomics, 23/01/2023, Volume 9:000925, Number 23, (2023)
Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium,
, Microbial Genomics, Nov-01-2024, Volume 9, Issue 1, (2023)
Whole-genome sequencing-based phylogenomic investigation of unexpected Bacillus cereus contaminations collected from commercial vitamin B2 food and feed additives sold on the Belgian market,
, Applied Bioinformatics and Public Health Microbiology , 2023, Hinxton, OK, (2023)
Whole-Genome Sequencing-Based Screening of MRSA in Patients and Healthcare Workers in Public Hospitals in Benin.,
, Microorganisms, 2023 Jul 31, Volume 11, Issue 8, (2023)
Detection and identification of authorized and unauthorized GMOs using high-throughput sequencing with the support of a sequence-based GMO database,
, Food Chemistry: Molecular Sciences, Jan-07-2022, Volume 4, (2022)
A general approach to identify low-frequency variants within influenza samples collected during routine surveillance.,
, Microb Genom, 2022 09, Volume 8, Issue 9, (2022)
The key role of WGS-based surveillance of Listeria monocytogenes in both human and food isolates in outbreak investigations,
, 26th Conference on Food Microbiology, 13-14/10/2022, Issue BSFM, Brussels, Belgium, (2022)
Metagenomic Characterization of Multiple Genetically Modified Bacillus Contaminations in Commercial Microbial Fermentation Products,
, Life, 25/11/2022, Volume 12, Issue 12, (2022)
Metagenomics to Detect and Characterize Viruses in Food Samples at Genome Level? Lessons Learnt from a Norovirus Study,
, Foods, Jan-11-2022, Volume 11, Issue 21, (2022)
Optimised long-read sequence bioinformatics tool for the analysis of the resistome and microbial communities,
, 13/12/2022, Zenodo, p.12, (2022)
Population Analysis of O26 Shiga Toxin-Producing Causing Hemolytic Uremic Syndrome in Italy, 1989-2020, Through Whole Genome Sequencing.,
, Front Cell Infect Microbiol, 2022, Volume 12, (2022)
Report on an initial assessment of long-read sequencing for metagenome (community and AMR) analysis (defined community, spiked and real simple and complex matrices) and comparison to current short-read standard,
, 13/12/2022, Zenodo, p.44, (2022)
Report on initial findings of on-site diagnostic tests and IT solutions for human clinical, veterinary and environmental samples for early warning of emerging resistant pathogens,
, 13/12/2022, Zenodo, p.12, (2022)
Report on the feasibility of using Hi-C sequencing for metagenomics to define the context of AMR genes,
, 13/12/2022, Zenodo, p.10, (2022)
A shotgun metagenomics approach to detect and characterize unauthorized genetically modified microorganisms in microbial fermentation products,
, ONE Conference 2022, 21/06/2022, Issue EFSA, (2022)