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2023
Salmonella Durban meningitis: case report and genomics study., Nanga Diasi, Christelle, Ceyssens Pieter-Jan, Vodolazkaia Alexandra, Mukovnikova Marina, Dorval Sarah, Bauraind Olivia, and Mattheus Wesley , BMC Infect Dis, 2023 May 20, Volume 23, Issue 1, (2023)
Targeted Chromosomal Barcoding Establishes Direct Genotype-Phenotype Associations for Antibiotic Resistance in Mycobacterium abscessus., Calvet-Seral, Juan, Crespo-Yuste Estefanía, Mathys Vanessa, Rodriguez-Villalobos Hector, Ceyssens Pieter-Jan, Martin Anandi, and Gonzalo-Asensio Jesús , Microbiol Spectr, 2023 Mar 29, (2023)
Using a combination of short and long read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum-beta-lactamases (ESBL) in clinical Shigella and Salmonella isolates in Belgium, Berbers, Bas, Vanneste Kevin, Roosens Nancy, Marchal K., Ceyssens Pieter-Jan, and De Keersmaecker Sigrid C. J. , Microbial Genomics, 23/01/2023, Volume 9:000925, Number 23, (2023)
Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium, Berbers, Bas, Vanneste Kevin, Roosens Nancy, Marchal Kathleen, Ceyssens Pieter-Jan, and De Keersmaecker Sigrid C. J. , Microbial Genomics, Nov-01-2024, Volume 9, Issue 1, (2023)
2022
The AMR-ARRAY: A modular bead array detecting β-lactam, (fluoro) quinolone, colistin, aminoglycoside and macrolide resistance determinants in Gram-negative bacteria., Timmermans, Michaël, Latour Samuel, Ceyssens Pieter-Jan, Garcia-Graells Cristina, Kowalewicz Carole, Fretin David, Denis Olivier, Wattiau P, and Boland Cécile , J Microbiol Methods, 2022 05, Volume 196, (2022)
Metabolic reprogramming of Pseudomonas aeruginosa by phage-based quorum sensing modulation., Hendrix, Hanne, Zimmermann-Kogadeeva Maria, Zimmermann Michael, Sauer Uwe, De Smet Jeroen, Muchez Laurens, Lissens Maries, Staes Ines, Voet Marleen, Wagemans Jeroen, et al. , Cell Rep, 2022 02 15, Volume 38, Issue 7, (2022)
Multicentre study on the reproducibility of MALDI-TOF MS for nontuberculous mycobacteria identification., Rodriguez-Temporal, David, Alcaide Fernando, Mareković Ivana, O'Connor James Anthony, Gorton Rebecca, van Ingen Jakko, Van den Bossche An, Héry-Arnaud Genevieve, Beauruelle Clémence, Orth-Höller Dorothea, et al. , Sci Rep, 2022 Jan 24, Volume 12, Issue 1, (2022)
Validation of Fourier Transform Infrared Spectroscopy for Serotyping of Streptococcus pneumoniae., Passaris, I, Mauder N, Kostrzewa M, Burckhardt I, Zimmermann S, van Sorge N M., Slotved H-C, Desmet S, and Ceyssens Pieter-Jan , J Clin Microbiol, 2022 Jul 20, Volume 60, Issue 7, (2022)
2021
The bacteriophage LUZ24 "Igy" peptide inhibits the Pseudomonas DNA gyrase., De Smet, Jeroen, Wagemans Jeroen, Boon Maarten, Ceyssens Pieter-Jan, Voet Marleen, Noben Jean-Paul, Andreeva Julia, Ghilarov Dmitry, Severinov Konstantin, and Lavigne Rob , Cell Rep, 2021 Aug 24, Volume 36, Issue 8, (2021)
A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and In Silico Approaches, Bogaerts, Bert, Delcourt Thomas, Soetaert Karine, Boarbi Samira, Ceyssens Pieter-Jan, Winand Raf, Van Braekel Julien, De Keersmaecker Sigrid C. J., Roosens Nancy, Marchal Kathleen, et al. , J Clin Microbiol, 2021 Mar 31, (2021)
Coverage of the national surveillance system for human Salmonella infections, Belgium, 2016-2020., Van Goethem, Nina, Van den Bossche An, Ceyssens Pieter-Jan, Lajot Adrien, Coucke Wim, Vernelen Kris, Roosens Nancy, De Keersmaecker Sigrid C. J., Van Cauteren Dieter, and Mattheus Wesley , PLoS One, 2021, Volume 16, Issue 8, (2021)
Genomic epidemiology of persistently circulating MDR Shigella sonnei strains associated with men who have sex with men (MSM) in Belgium (2013–19), Fischer, Nathalie, Maex Margo, Mattheus Wesley, Van den Bossche An, Van Cauteren Dieter, Laisnez Valeska, Hammami Naïma, and Ceyssens Pieter-Jan , Journal of Antimicrobial Chemotherapy, Sep-10-2022, Volume 77, Issue 1, (2021)
A molecular assay for rapidly distinguishing the AviPro SALMONELLA VAC T vaccine strain from wild-type field isolates, Ceyssens, Pieter-Jan, Van den Bossche An, Phan Lac Kim, Van Hoorde Koenraad, and Mattheus Wesley , Journal of Microbiological Methods, May-2021, Volume 184, (2021)
Outbreak of Central American born Shigella sonnei in two youth camps in Belgium in the summer of 2019, Van den Bossche, An, Ceyssens Pieter-Jan, Denayer Sarah, Hammami Naïma, van den Beld Maaike, Dallman Timothy J., and Mattheus Wesley , European Journal of Clinical Microbiology & Infectious Diseases , 2021 Feb 11, (2021)
Phage Biobank: Present Challenges and Future Perspectives., Lin, Ruby Cy, Sacher Jessica C., Ceyssens Pieter-Jan, Zheng Jan, Khalid Ali, and Iredell Jonathan R. , Curr Opin Biotechnol, 2021 04, Volume 68, (2021)
Phylogenomic Investigation of Increasing Fluoroquinolone Resistance among Belgian Cases of Shigellosis between 2013 and 2018 Indicates Both Travel-Related Imports and Domestic Circulation., Bogaerts, Bert, Winand Raf, Van Braekel Julien, Mattheus Wesley, De Keersmaecker Sigrid C. J., Roosens Nancy, Marchal Kathleen, Vanneste Kevin, and Ceyssens Pieter-Jan , Microorganisms, 2021 Apr 06, Volume 9, Issue 4, (2021)
Retrospective evaluation of routine whole genome sequencing of Mycobacterium tuberculosis at the Belgian National Reference Center, 2019., Soetaert, Karine, Ceyssens Pieter-Jan, Boarbi Samira, Bogaerts Bert, Delcourt Thomas, Vanneste Kevin, De Keersmaecker Sigrid C. J., Roosens Nancy, Vodolazkaia Alexandra, Mukovnikova Marina, et al. , Acta Clin Belg, 2021 Nov 09, (2021)
Whole-genome sequencing for TB source investigations: principles of ethical precision public health., Van Rie, A, de Viedma D G., Meehan C, Comas I, Heupink T H, De Vos E, de Oñate W A, Mathys Vanessa, Ceyssens Pieter-Jan, Groenen G, et al. , Int J Tuberc Lung Dis, 2021 Mar 01, Volume 25, Issue 3, (2021)
2020
Development of an NGS-Based Workflow for Improved Monitoring of Circulating Plasmids in Support of Risk Assessment of Antimicrobial Resistance Gene Dissemination., Berbers, Bas, Ceyssens Pieter-Jan, Bogaerts Pierre, Vanneste Kevin, Roosens Nancy, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Antibiotics (Basel), 2020 Aug 11, Volume 9, Issue 8, (2020)
Genomic epidemiology of emerging ESBL-producing Kentucky in Europe., Coipan, Claudia E., Westrell Therese, van Hoeck Angela H. A. M., Alm Erik, Kotila Saara, Berbers Bas, De Keersmaecker Sigrid C. J., Ceyssens Pieter-Jan, Borg Maria Louise, Chattaway Marie, et al. , Emerg Microbes Infect, 2020 Dec, Volume 9, Issue 1, (2020)
The Phage-Encoded -Acetyltransferase Rac Mediates Inactivation of Transcription by Cleavage of the RNA Polymerase Alpha Subunit., Ceyssens, Pieter-Jan, De Smet Jeroen, Wagemans Jeroen, Akulenko Natalia, Klimuk Evgeny, Hedge Subray, Voet Marleen, Hendrix Hanne, Paeshuyse Jan, Landuyt Bart, et al. , Viruses, 2020 09 02, Volume 12, Issue 9, (2020)
2019
Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei., Hao, Chung The, Boinett Christine, Pham Duy Thanh, Jenkins Claire, Weill François-Xavier, Howden Benjamin P., Valcanis Mary, De Lappe Niall, Cormican Martin, Wangchuk Sonam, et al. , Nat Commun, 2019 10 23, Volume 10, Issue 1, (2019)
Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198., Hawkey, Jane, Le Hello Simon, Doublet Benoît, Granier Sophie A., Hendriksen Rene S., Fricke Florian W., Ceyssens Pieter-Jan, Gomart Camille, Billman-Jacobe Helen, Holt Kathryn E., et al. , Microb Genom, 2019 07, Volume 5, Issue 7, (2019)
RNA-Based susceptibility testing of Mycobacterium tuberculosis, Van den Bossche, An, Bhattacharyya Roby, Coppee Jean-Yves, Baulard Alain, Hung Deborah, Mathys Vanessa, and Ceyssens Pieter-Jan , 29th ECCMID, 1316 April, 2019, Issue ESCMID, Amsterdam, The Netherlands, (2019)
Shifting national surveillance of Shigella infections toward geno-serotyping by the development of a tailored Luminex assay and NGS workflow., Ventola, Eleonora, Bogaerts Bert, De Keersmaecker Sigrid C. J., Vanneste Kevin, Roosens Nancy, Mattheus Wesley, and Ceyssens Pieter-Jan , Microbiologyopen, 2019 Mar 28, (2019)

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