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2022
Metagenomics to Detect and Characterize Viruses in Food Samples at Genome Level? Lessons Learnt from a Norovirus Study, Buytaers, Florence E., Verhaegen Bavo, Gand Mathieu, D'aes Jolien, Vanneste Kevin, Roosens Nancy, Marchal Kathleen, Denayer Sarah, and De Keersmaecker Sigrid C. J. , Foods, Jan-11-2022, Volume 11, Issue 21, (2022)
Sentinel SARI surveillance in Belgium in times of COVID-19 pandemic, Bossuyt, Nathalie, Denayer Sarah, Reynders Marijke, Petit Evelyne, Magerman Koen, Jouck Door, Bleyen Marieke, Dauby Nicolas, Hainaut Marc, Seyler Lucie, et al. , OPTIONS XI for the Control of Influenza, 2022, Belfast, United-Kingdom, (2022)
Shotgun metagenomics as a ONE Health tool for better protecting human health, Gand, Mathieu, Buytaers Florence E., Bloemen Bram, Saltykova Assia, Denayer Sarah, Verhaegen Bavo, Mattheus Wesley, Piérard Denis, Bogaerts Bert, Marchal Kathleen, et al. , EFSA One, 21/06/2022, Issue EFSA, (2022)
Surveillance des symptômes grippaux dans les maisons de repos et de soins Belges : saison 2021-2022, Bossuyt, Nathalie, Vermeulen Melissa, Laisnez Valeska, Latour Katrien, Barbezange Cyril, Denayer Sarah, and Dufrasne François , 2022, Bruxelles, Belgique, p.7, (2022)
Surveillance van griepale aandoeningen in Belgische woonzorgcentra seizoen 2021-2022, Bossuyt, Nathalie, Vermeulen Melissa, Laisnez Valeska, Latour Katrien, Barbezange Cyril, Denayer Sarah, and Dufrasne François , 2022, Brussel, p.6, (2022)
Was SARI surveillance successful at monitoring SARS-CoV-2 circulation and its genomic evolution in Belgium throughout the pandemic?, Denayer, Sarah, Monsieurs Bert, Van Eycken Reinout, Reynders Marijke, Petit Evelyn, Magerman Koen, Jouck Door, Bleyen Marieke, Dauby Nicolas, Hainaut Marc, et al. , OPTIONS XI for the Control of Influenza, 2022, Belfast, United-Kingdom, (2022)
2021
Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak, Buytaers, Florence E., Saltykova Assia, Mattheus Wesley, Verhaegen Bavo, Roosens Nancy, Vanneste Kevin, Laisnez Valeska, Hammami Naïma, Pochet Brigitte, Cantaert Vera, et al. , Microbial Genomics, Jul-04-2021, Volume 7, Issue 4, (2021)
Outbreak of Central American born Shigella sonnei in two youth camps in Belgium in the summer of 2019, Van den Bossche, An, Ceyssens Pieter-Jan, Denayer Sarah, Hammami Naïma, van den Beld Maaike, Dallman Timothy J., and Mattheus Wesley , European Journal of Clinical Microbiology & Infectious Diseases , 2021 Feb 11, (2021)
Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies, Buytaers, Florence E., Saltykova Assia, Denayer Sarah, Verhaegen Bavo, Vanneste Kevin, Roosens Nancy, Piérard Denis, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Frontiers in Microbiology, May-11-2021, Volume 12, (2021)
Toxi-infections alimentaires en Belgique - Rapport annuel 2020, Delbrassinne, Laurence, Verhaegen Bavo, Denayer Sarah, and Van Hoorde Koenraad , 12/2021, Brussels, Belgium, p.41, (2021)
Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods, Bogaerts, Bert, Nouws Stéphanie, Verhaegen Bavo, Denayer Sarah, Van Braekel Julien, Winand Raf, Fu Qiang, Crombé Florence, Piérard Denis, Marchal Kathleen, et al. , Microbial Genomics, Jan-03-2021, Volume 7, Issue 3, (2021)
Voedselvergiftigingen in België - Jaaroverzicht 2020, Delbrassinne, Laurence, Verhaegen Bavo, Denayer Sarah, and Van Hoorde Koenraad , 12/2021, Brussels, Belgium, p.41, (2021)
Whole Genome Sequencing Provides an Added Value to the Investigation of Staphylococcal Food Poisoning Outbreaks, Nouws, Stéphanie, Bogaerts Bert, Verhaegen Bavo, Denayer Sarah, Laeremans Lasse, Marchal Kathleen, Roosens Nancy, Vanneste Kevin, and De Keersmaecker Sigrid C. J. , Frontiers in Microbiology, Feb-11-2021, Volume 12, (2021)
2020
The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country., Nouws, Stéphanie, Bogaerts Bert, Verhaegen Bavo, Denayer Sarah, Crombé Florence, De Rauw Klara, Piérard Denis, Marchal Kathleen, Vanneste Kevin, Roosens Nancy, et al. , Foods, 2020 Aug 01, Volume 9, Issue 8, (2020)
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates, Nouws, Stéphanie, Bogaerts Bert, Verhaegen Bavo, Denayer Sarah, Piérard Denis, Marchal Kathleen, Roosens Nancy, Vanneste Kevin, and De Keersmaecker Sigrid C. J. , Scientific Reports, Jan-12-2020, Volume 10, Issue 1, (2020)
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates., Nouws, Stéphanie, Bogaerts Bert, Verhaegen Bavo, Denayer Sarah, Piérard Denis, Marchal Kathleen, Roosens Nancy, Vanneste Kevin, and De Keersmaecker Sigrid C. J. , Sci Rep, 2020 09 04, Volume 10, Issue 1, (2020)
Influence of reduced levels or suppression of sodium nitrite on the outgrowth and toxinogenesis of psychrotrophic Clostridium botulinum Group II type B in cooked ham., Lebrun, S, Van Nieuwenhuysen Tom, Crèvecoeur S, Vanleyssem R, Thimister J, Denayer Sarah, Jeuge S, Daube G, Clinquart A, and Fremaux B , Int J Food Microbiol, 2020 Dec 02, Volume 334, (2020)
NAuRA: Genomic Tool to Identify Staphylococcal Enterotoxins in Strains Responsible for FoodBorne Outbreaks., Merda, Déborah, Felten Arnaud, Vingadassalon Noémie, Denayer Sarah, Titouche Yacine, Decastelli Lucia, Hickey Bernadette, Kourtis Christos, Daskalov Hristo, Mistou Michel-Yves, et al. , Front Microbiol, 2020, Volume 11, (2020)
A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine., Buytaers, Florence E., Saltykova Assia, Denayer Sarah, Verhaegen Bavo, Vanneste Kevin, Roosens Nancy, Piérard Denis, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Microorganisms, 2020 Aug 05, Volume 8, Issue 8, (2020)
Staphylococcal enterotoxin gene cluster: prediction of enterotoxin (SEG and SEI) production and of the source of food poisoning based on Saβ typing., Schwendimann, L, Merda D, Berger T, Denayer Sarah, Feraudet Tarisse C., Kläui A J, Messio S, Mistou M Y., Nia Y, Hennekinne J A., et al. , Appl Environ Microbiol, 2020 Dec 18, (2020)
Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study., Saltykova, Assia, Buytaers Florence E., Denayer Sarah, Verhaegen Bavo, Piérard Denis, Roosens Nancy, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Int J Mol Sci, 2020 Aug 08, Volume 21, Issue 16, (2020)
Strategy for the identification of micro-organisms producing food and feed products: Bacteria producing food enzymes as study case, Deckers, Marie, Vanneste Kevin, Winand Raf, De Keersmaecker Sigrid C. J., Denayer Sarah, Heyndrickx Marc, Deforce Dieter, Fraiture Marie-Alice, and Roosens Nancy , Food Chemistry, Jan-02-2020, Volume 305, (2020)
Toxi-infections alimentaires en Belgique - Rapport annuel 2019, Denayer, Sarah, Verhaegen Bavo, and Van Hoorde Koenraad , 2020, Number 43, p.43, (2020)
Voedselvergiftigingen in Belgie en Vlaanderen - Jaaroverzicht 2019, Denayer, Sarah, Verhaegen Bavo, and Van Hoorde Koenraad , 04/2020, Number 42, Brussels, Belgium, p.42, (2020)
Voedselvergiftigingen in België - jaaroverzicht 2019, Denayer, Sarah, Verhaegen Bavo, and Van Hoorde Koenraad , 2020, Number 42, Brussels, Belgium, p.42, (2020)

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