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Résultats de la recherche - 127 results
The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
collections Cyanobacteria Genomics Gloeobacterales Metagenomics nextflow phylogenomics Phylogeny Singularity containers Workflow Abstract: Background: Microbial culture collections play a key role in taxonomy ...
Genetic relatedness of Staphylococcus aureus isolates within food outbreaks by single nucleotide polymorphisms.
Jacques-Antoine; Cavaiuolo, Marina Source: Int J Food Microbiol, Volume 433 (2025) Keywords: Disease Outbreaks Food Microbiology Humans Phylogeny Polymorphism, Single Nucleotide Retrospective Studies Staphylococcal ...
Sheeppox virus genome sequences from the European outbreaks in Spain, Bulgaria, and Greece in 2022-2024.
Keywords: Animals Bulgaria capripoxvirus Disease Outbreaks Genome, Viral Greece Phylogeny Poxviridae Infections Sheep Sheep Diseases Spain whole genome sequencing Abstract: In 2022-2024, three outbreaks of ...
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
an open-source workflow, Prokaryotic Awesome variant Calling Utility (PACU) (https://github.com/BioinformaticsPlatformWIV- ISP / PACU), for constructing SNP phylogenies using Illumina and/or ONT R9 ...
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
an open-source workflow, Prokaryotic Awesome variant Calling Utility (PACU) (https://github.com/BioinformaticsPlatformWIV- ISP / PACU), for constructing SNP phylogenies using Illumina and/or ONT R9 ...
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
an open-source workflow, Prokaryotic Awesome variant Calling Utility (PACU) (https://github.com/BioinformaticsPlatformWIV- ISP / PACU), for constructing SNP phylogenies using Illumina and/or ONT R9 ...
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
(https://github.com/BioinformaticsPlatformWIV- ISP / PACU), for constructing SNP phylogenies using Illumina and/or ONT R9 / R10 sequencing data. The workflow was evaluated using outbreak data sets of Shiga toxin-producing and by comparing ONT R9 ...
RNA sequencing of avian paramyxovirus (Paramyxoviridae, Avulavirinae) isolates from wild mallards in Belgium, 2021: complete genomes and coinfections.
Issue 5 (2023) Keywords: Animals Avulavirus Belgium Coinfection Ducks Influenza in Birds Newcastle disease virus Paramyxoviridae Phylogeny Poultry Rna Sequence Analysis, RNA Abstract: We used untargeted ...
Lumpy Skin Disease Virus Genome Sequence Analysis: Putative Spatio-Temporal Epidemiology, Single Gene versus Whole Genome Phylogeny and Genomic Evolution.
Animals Cattle Disease Outbreaks Evolution, Molecular Genomics Humans Lumpy skin disease Lumpy skin disease virus Phylogeny Abstract: is a poxvirus from the genus that mainly affects bovines and it causes ...
Development of strain-level shotgun metagenomics approaches to detect and characterize microbiological contaminants in the context of food safety
microbiological foodborne contaminants to the strain level and with achievement of a relatedness study (phylogeny), with a focus on the applicability of the method in order to be easily implemented in reference ...