Résultats de la recherche - 47 results
Metagenomics-based tracing of genetically modified microorganism contaminations in commercial fermentation products
feasibility of a metagenomic shotgun sequencing approach to investigate microbial contamination in fermentation products, focusing on source tracing of GMM strains using innovative strain deconvolution and ...
Genetic relatedness of Staphylococcus aureus isolates within food outbreaks by single nucleotide polymorphisms.
Food Poisoning Staphylococcal Infections Staphylococcus aureus whole genome sequencing Abstract: Investigation of bacterial food outbreaks by whole genome sequencing can rely on the inspection of the ...
Development of a shotgun metagenomics workflow for the comprehensive surveillance of biological impurities in vitamin-containing food products
resistance genes. Existing control strategies rely on targeted PCR-based methods, unsuitable to detect untargeted or unknown impurities. In this study, we developed an open shotgun metagenomic sequencing ...
An interlaboratory proficiency test using metagenomic sequencing as a diagnostic tool for the detection of RNA viruses in swine fecal material.
Biology Feces Genome, Viral High-Throughput Nucleotide Sequencing Laboratory Proficiency Testing Metagenome Metagenomics RNA Viruses RNA, Viral Swine Swine Diseases Abstract: UNLABELLED: Metagenomic shotgun ...
FT-IR spectroscopy as a rapid method for Salmonella spp. typing
sensitivity of the method. Materials and Methods 115 Salmonella isolates fully characterized by whole genome sequencing were included in the study. The strains, originating from food, feed and primary ...
Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing
Kevin Vanneste Source: Frontiers in Microbiology, Volume 14 (2023) Keywords: Bacillus cereus Food Additives riboflavin Surveillance whole-genome sequencing Abstract: Bacillus cereus is a spore-forming ...
Towards facilitated interpretation of shotgun metagenomics long-read sequencing data analyzed with KMA for the detection of bacterial pathogens and their antimicrobial resistance genes
Publication Type: Peer reviewed scientific article Authors: Mathieu Gand; Navickaite, Indre; Bartsch, Lee-Julia; Grützke, Josephine; Overballe-Petersen, Søren; Rasmussen, Astrid; Otani, Saria; Michelacci, Valeria; Matamoros, Bosco Rodríguez; González-Zorn ...
BSFM 2023- L. monocytogenes in Plant-Based Foods: insights from of a recent foodborne outbreak linked to vegan alternative to cheese
following ISO 11290 – 1 and – 2. A human strain was collected at the NRC Listeria. All isolated strains underwent serotyping for further characterisation at the NRC Listeria, and Whole Genome Sequencing (WGS) ...
Strain-level characterization without culture enrichment? Easing and accelerating outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling
resolved. Shotgun metagenomics is a sequencing method involving the analysis of the genetic material directly extracted from a sample, without the need for an isolation of the bacteria. By sequencing and ...
Keeping our food safe: the use of sequencing technologies for foodborne outbreak investigations
sequencing technologies Abstract: Keeping our food safe: how the sequencing technologies can be used for foodborne outbreak investigations (WGS and metagenomics) Health Topics: Food consumption and food ...