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2024
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens., Bert, Bogaerts , J Clin Microbiol, 2024 Mar 05, (2024)
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens., Bogaerts, Bert, Van den Bossche An, Verhaegen Bavo, Delbrassinne Laurence, Mattheus Wesley, Nouws Stéphanie, Godfroid Maxime, Hoffman Stefan, Roosens Nancy, De Keersmaecker Sigrid C. J., et al. , J Clin Microbiol, 2024 Mar 05, (2024)
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens., Bert, Bogaerts , J Clin Microbiol, 2024 Mar 05, (2024)
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens., Bert, Bogaerts , J Clin Microbiol, 2024 Mar 05, (2024)
Development of a reverse transcriptase digital droplet polymerase chain reaction‐based approach for SARS‐CoV‐2 variant surveillance in wastewater, Van Poelvoorde, Laura, Gobbo Andrea, Nauwelaerts S., Verhaegen Bavo, Lesenfants Marie, Janssens Raphael, Hutse Veronik, Fraiture Marie-Alice, De Keersmaecker Sigrid C. J., Herman Philippe, et al. , Water Environment Research, Jan-03-2024, Volume 96, Issue 3, (2024)
Pilot market surveillance of GMM contaminations in alpha-amylase food enzyme products: A detection strategy strengthened by a newly developed qPCR method targeting a GM Bacillus licheniformis producing alpha-amylase, Fraiture, Marie-Alice, Gobbo Andrea, Guillitte Chloé, Marchesi Ugo, Verginelli Daniela, De Greve Joke, D'aes Jolien, Vanneste Kevin, Papazova N., and Roosens Nancy , Food Chemistry: Molecular Sciences, Jan-07-2024, Volume 8, (2024)
Wastewater-based epidemiological surveillance - Methodological appendix, Janssens, Raphael, Maloux Hadrien, Hanoteaux Sven, Van Poelvoorde Laura, Roosens Nancy, Verhaegen Bavo, Linussio Julie, Van Hoorde Koenraad, Van Gucht Steven, De Ridder Karin, et al. , feb 2024, Brussels, Belgium, p.17, (2024)
Wastewater-based epidemiological surveillance - Weekly report, Janssens, Raphael, Maloux Hadrien, Hanoteaux Sven, Van Poelvoorde Laura, Roosens Nancy, Verhaegen Bavo, Linussio Julie, Van Hoorde Koenraad, Van Gucht Steven, De Ridder Karin, et al. , 2024, Brussels, Belgium, p.26, (2024)
2023
Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteriaAbstractBackgroundResultsConclusion, Gand, Mathieu, Bloemen Bram, Vanneste Kevin, Roosens Nancy, and De Keersmaecker Sigrid C. J. , BMC Genomics, Jan-12-2023, Volume 24, Issue 1, (2023)
Contaminations of AMR genes linked to the presence of genetically modified microorganisms in the food and feed chain , Fraiture, Marie-Alice, De Keersmaecker Sigrid C. J., and Roosens Nancy , Brussels, Belgium, (2023)
Detection of food and feed plant products obtained by targeted mutagenesis and cisgenesis, Barbante, A., Broothaerts W., Burns M., Debode F., De Giacomo M., De Loose M., Demšar T., Eckermann K., Fraiture Marie-Alice, Grantina-Ievina L., et al. , Publications Office of the European Union, 2023, Volume JRC133689, Luxembourg, (2023)
Development of a Droplet Digital PCR to Monitor SARS-CoV-2 Omicron Variant BA.2 in Wastewater Samples, Van Poelvoorde, Laura, Picalausa Corinne, Gobbo Andrea, Verhaegen Bavo, Lesenfants Marie, Herman Philippe, Van Hoorde Koenraad, and Roosens Nancy , Microorganisms, 12/03/2023, Volume 11, Issue 3, (2023)
Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillanceAbstract, Bloemen, Bram, Gand Mathieu, Vanneste Kevin, Marchal Kathleen, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Scientific Reports, Jan-12-2023, Volume 13, Issue 1, (2023)
Development of a Taxon-Specific Real-Time Polymerase Chain Reaction Method to Detect Trichoderma reesei Contaminations in Fermentation Products, Fraiture, Marie-Alice, Gobbo Andrea, Papazova N., and Roosens Nancy , Fermentation, Jan-11-2023, Volume 9, Issue 11, (2023)
Development of a taxon-specific real-time polymerase chain reaction method to detect Trichoderma reesei contaminations in fermentation products. Fermentation, 9 (11), 926, Fraiture, Marie-Alice, Gobbo Andrea, Papazova N., and Roosens Nancy , Fermentation, Volume 9, (2023)
Development of a Taxon-Specific Real-Time Polymerase Chain Reaction Method to Detect Trichoderma reesei Contaminations in Fermentation Products, Fraiture, Marie-Alice, Gobbo Andrea, Papazova N., and Roosens Nancy , Fermentation, Jan-11-2023, Volume 9, Issue 11, (2023)
Development of Digital Droplet PCR Targeting the Influenza H3N2 Oseltamivir-Resistant E119V Mutation and Its Performance through the Use of Reverse Genetics Mutants, Van Poelvoorde, Laura, Dufrasne François, Van Gucht Steven, Saelens Xavier, and Roosens Nancy , Current Issues in Molecular Biology, Jan-03-2023, Volume 45, Issue 3, (2023)
Development of Digital Droplet PCR Targeting the Influenza H3N2 Oseltamivir-Resistant E119V Mutation and Its Performance through the Use of Reverse Genetics Mutants., Van Poelvoorde, Laura, Dufrasne François, Van Gucht Steven, Saelens Xavier, and Roosens Nancy , Curr Issues Mol Biol, 2023 Mar 17, Volume 45, Issue 3, (2023)
A new open strategy for impurity surveillance of commercial microbial fermentation food products, Fraiture, Marie-Alice, Roosens Nancy, Papazova N., De Keersmaecker Sigrid C. J., Vanneste Kevin, Orval Rik, Van Laere Yari, Debode Frédéric, De Loose Marc, Van Poucke Christof, et al. , Brussels, Belgium, (2023)
Novel threats- State of the art of synthetic biology, T. Johansen, Bjordal, Madslien E.H., Forsman M., Ekström F., Fykse E.M., De Keersmaecker Sigrid C. J., Roosens Nancy, Vanneste Kevin, Fraiture Marie-Alice, Palyi B., et al. , Munich, Germany, (2023)
Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing, Bogaerts, Bert, Fraiture Marie-Alice, Van Nieuwenhuysen Tom, Jacobs Bram, Van Hoorde Koenraad, De Keersmaecker Sigrid C. J., Roosens Nancy, and Vanneste Kevin , Frontiers in Microbiology, Sep-06-2024, Volume 14, (2023)
Strain-level characterization without culture enrichment? Easing and accelerating outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling, Buytaers, Florence E., Verhaegen Bavo, Van Nieuwenhuysen Tom, Roosens Nancy, Vanneste Kevin, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , BSFM, 2023-10-13, Brussels, Belgium, (2023)
Targeted High-Throughput Sequencing Enables the Detection of Single Nucleotide Variations in CRISPR/Cas9 Gene-Edited Organisms, Fraiture, Marie-Alice, D'aes Jolien, Guiderdoni Emmanuel, Meunier Anne-Cécile, Delcourt Thomas, Hoffman Stefan, Vandermassen Els, De Keersmaecker Sigrid C. J., Vanneste Kevin, and Roosens Nancy , Foods, Jan-02-2023, Volume 12, Issue 3, (2023)
Time series modelling for wastewater-based epidemiology of COVID-19: A nationwide study in 40 wastewater treatment plants of Belgium, February 2021 to June 2022, Bertels, Xander, Hanoteaux Sven, Janssens Raphael, Maloux Hadrien, Verhaegen Bavo, Delputte Peter, Boogaerts Tim, van Nuijs Alexander L. N., Brogna Delphine, Linard Catherine, et al. , Science of The Total Environment, 19-07-2023, Volume 899, (2023)
Time series modelling for wastewater-based epidemiology of COVID-19: A nationwide study in 40 wastewater treatment plants of Belgium, February 2021 to June 2022, Bertels, Xander, Hanoteaux Sven, Janssens Raphael, Maloux Hadrien, Verhaegen Bavo, Delputte Peter, Boogaerts Tim, van Nuijs Alexander L. N., Brogna Delphine, Linard Catherine, et al. , Science of The Total Environment, Jan-11-2023, Volume 899, (2023)

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