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2019
Detailed Evaluation of Data Analysis Tools for Subtyping of Bacterial Isolates Based on Whole Genome Sequencing: as a Proof of Concept., Saltykova, Assia, Mattheus Wesley, Bertrand Sophie, Roosens Nancy, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Front Microbiol, 2019, Volume 10, (2019)
Development of a real-time PCR method for the genoserotyping of Salmonella Paratyphi B variant Java., Gand, Mathieu, Mattheus Wesley, Saltykova Assia, Roosens Nancy, Dierick Katelijne, Marchal Kathleen, De Keersmaecker Sigrid C. J., and Bertrand Sophie , Appl Microbiol Biotechnol, 2019 Jun, Volume 103, Issue 12, (2019)
Exploiting the Advantages of Molecular Tools for the Monitoring of Fungal Indoor Air Contamination: First Detection of in Indoor Air of Air-Conditioned Offices., Libert, Xavier, Chasseur Camille, Packeu Ann, Bureau Fabrice, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Microorganisms, 2019 Dec 10, Volume 7, Issue 12, (2019)
MinION sequencing technology to characterize unauthorized GM petunia plants circulating on the European Union market, Fraiture, Marie-Alice, Ujhelyi Gabriella, Ovesna Jaroslava, Van Geel D., De Keersmaecker Sigrid C. J., Saltykova Assia, Papazova N., and Roosens Nancy , Scientific reports, Volume 9, Issue 7141, (2019)
A new multiplex RT-qPCR method for the simultaneous detection and discrimination of Zika and chikungunya viruses., Broeders, Sylvia, Garlant Linda, Fraiture Marie-Alice, Vandermassen Els, Suin Vanessa, Vanhomwegen Jessica, Dupont-Rouzeyrol Myrielle, Rousset Dominique, Van Gucht Steven, and Roosens Nancy , Int J Infect Dis, 2019 Dec 26, (2019)
Shifting national surveillance of Shigella infections toward geno-serotyping by the development of a tailored Luminex assay and NGS workflow., Ventola, Eleonora, Bogaerts Bert, De Keersmaecker Sigrid C. J., Vanneste Kevin, Roosens Nancy, Mattheus Wesley, and Ceyssens Pieter-Jan , Microbiologyopen, 2019 Mar 28, (2019)
SPECENZYM : A project to study the purity of food enzymes, Deckers, Marie, Vanneste Kevin, Denayer Sarah, De Keersmaecker Sigrid C. J., Heyndrickx M, De Loose M, Berben G, Debode F, Papazova N., Fox P, et al. , 2019, (2019)
Status and potential of bacterial genomics for public health practice: a scoping review, Van Goethem, Nina, Descamps Tine, Devleesschauwer Brecht, Roosens Nancy, Boon Nele A. M., Van Oyen Herman, and Robert Annie , Implementation Science, Jan-12-2019, Volume 14, Issue 1, (2019)
Status and potential of bacterial genomics for public health practice: a scoping review, Van Goethem, Nina, Descamps Tine, Devleesschauwer Brecht, Roosens Nancy, Boon Nele, Van Oyen Herman, and Robert Annie , Implementation Science, Volume 14, (2019)
Targeting the 16S rRNA gene for bacterial identification in complex mixed samples: comparative evaluation of second (Illumina) and third (Oxford Nanopore Technologies) generation sequencing technologies., Winand, Raf, Bogaerts Bert, Hoffman Stefan, Lefèvre Loic, Delvoye Maud, Van Braekel Julien, Qiang Fu, Roosens Nancy, De Keersmaecker Sigrid C. J., and Vanneste Kevin , Int J Mol Sci, 2019 Dec 31, Volume 21, Issue 1, (2019)
Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: as a Proof-of-Concept., Bogaerts, Bert, Winand Raf, Qiang Fu, Van Braekel Julien, Ceyssens Pieter-Jan, Mattheus Wesley, Bertrand Sophie, De Keersmaecker Sigrid C. J., Roosens Nancy, and Vanneste Kevin , Front Microbiol, 2019, Volume 10, (2019)
Whole-Genome Sequencing of Multidrug-Resistant Escherichia coli Strains Harboring the Gene, Isolated from Seawater of the Algiers Coast in Algeria., Berrazeg, M, Deriet A, De Keersmaecker Sigrid C. J., Verhaegen Bavo, Vanneste Kevin, Botteldoorn N, Roosens Nancy, Mouffok F, and Drali R , Microbiol Resour Announc, 2019 Aug 22, Volume 8, Issue 34, (2019)
Whole-Genome Sequencing of Six Strains of Salmonella enterica Isolated from Imported Meat in Algeria., Deriet, A, Berrazeg M, De Keersmaecker Sigrid C. J., Botteldoorn N, Vanneste Kevin, Verhaegen Bavo, Roosens Nancy, Mouffok F, and Drali R , Microbiol Resour Announc, 2019 Aug 29, Volume 8, Issue 35, (2019)
2018
Application of whole genome data for in silico evaluation of primers and probes routinely employed for the detection of viral species by RT-qPCR using dengue virus as a case study., Vanneste, Kevin, Garlant Linda, Broeders Sylvia, Van Gucht Steven, and Roosens Nancy , BMC Bioinformatics, 2018 Sep 04, Volume 19, Issue 1, (2018)
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:., Saltykova, Assia, Wuyts Véronique, Mattheus Wesley, Bertrand Sophie, Roosens Nancy, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , PLoS One, 2018, Volume 13, Issue 2, (2018)
Detection and discrimination of five E. coli pathotypes using a combinatory SYBR® Green qPCR screening system, Barbau-Piednoir, Elodie, Denayer Sarah, Botteldoorn N, Dierick Katelijne, De Keersmaecker Sigrid C. J., and Roosens Nancy , Applied Microbiology and Biotechnology, Jan-04-2018, Volume 102, Issue 7, Number 3285, (2018)
Development and validation of an integrated DNA walking strategy to detect GMO expressing cry genes, Fraiture, Marie-Alice, Vandamme Julie, Herman Philippe, and Roosens Nancy , BMC Biotechnology, Jan-12-2018, Volume 18, Issue 1, (2018)
Development of a bioinformatics pipeline for the routine analysis of Influenza whole genome sequencing data, Fu, Qiang, Winand Raf, Van Braekel Julien, Barbezange Cyril, Hutse Veronik, Thomas Isabelle, Van Gucht Steven, De Keersmaecker Sigrid C. J., Roosens Nancy, and Vanneste Kevin , European Conference on Computational Biology 2018 conference (http://eccb18.org/). 8 – 12 September, 2018, Athens, Greece, (2018)
The genetic structure of the Belgian population, Van den Eynden, Jimmy, Descamps Tine, Delporte Els, Roosens Nancy, De Keersmaecker Sigrid C. J., De Wit Vanessa, Vermeesch Joris Robert, Goetghebeur Els, Tafforeau Jean, Demarest Stefaan, et al. , Human Genomics, Jan-12-2018, Volume 12, Issue 1, (2018)
High-resolution melting PCR analysis for rapid genotyping of Burkholderia mallei., Girault, G, Wattiau P, Saqib M, Martin B, Vorimore F, Singha H, Engelsma M, Roest H J., Spicic S, Grunow R, et al. , Infect Genet Evol, 2018 09, Volume 63, (2018)
Monitoring of influenza: Whole-Genome Sequencing to provide insights in the disease severity, Van Poelvoorde, Laura, De Keersmaecker Sigrid C. J., Vanneste Kevin, Van Gucht Steven, Thomas Isabelle, Saelens Xavier, Barbezange Cyril, and Roosens Nancy , The 6th International Influenza Meeting, 2-4 September 2018 Münster, Germany, (2018)
A multiplex oligonucleotide ligation-PCR method using the Luminex technology for the geno-serotyping of the most common Salmonella in Belgium, Gand, Mathieu, Mattheus Wesley, Saltykova Assia, Roosens Nancy, Dierick Katelijne, Marchal Kathleen, De Keersmaecker Sigrid C. J., and Bertrand Sophie , ECCMID, 2018, Madrid, Spain, (2018)
Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO., Fraiture, Marie-Alice, Saltykova Assia, De Keersmaecker Sigrid C. J., and Roosens Nancy , Sci Rep, 2018 May 21, Volume 8, Issue 1, (2018)
A novel genotoxin-specific qPCR array based on the metabolically competent human HepaRG™ cell line as a rapid and reliable tool for improved in vitro hazard assessment, Ates, Gamze, Mertens Birgit, Heymans Anja, Verschaeve Luc, Milushev Dimiter, Vanparys Philippe, Roosens Nancy, De Keersmaecker Sigrid C. J., Rogiers Vera, and Doktorova Tatyana Y. , Archives of Toxicology, Jun-02-2018, (2018)
2017
Detection of Plasmid-Mediated Colistin Resistance, mcr-1 and mcr-2 Genes, in Salmonella spp. Isolated from Food at Retail in Belgium from 2012 to 2015., Garcia-Graells, Cristina, De Keersmaecker Sigrid C. J., Nguyen Quang Trung, Anthonissen R., Aerts Raf, Roosens Nancy, Dierick Katelijne, and Botteldoorn N , Foodborne Pathog Dis, 28/11/2017, (2017)

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