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Zoekresultaten - 17 results
Metagenomics-based tracing of genetically modified microorganism contaminations in commercial fermentation products
feasibility of a metagenomic shotgun sequencing approach to investigate microbial contamination in fermentation products, focusing on source tracing of GMM strains using innovative strain deconvolution and ...
Development of a shotgun metagenomics workflow for the comprehensive surveillance of biological impurities in vitamin-containing food products
LWT, Volume 231 (2025) Keywords: Antimicrobial resistance genes Food safety monitoring genetically modified microorganism shotgun metagenomics Vitamins Abstract: Commercial vitamin-containing food ...
An interlaboratory proficiency test using metagenomic sequencing as a diagnostic tool for the detection of RNA viruses in swine fecal material.
Biology Feces Genome, Viral High-Throughput Nucleotide Sequencing Laboratory Proficiency Testing Metagenome Metagenomics RNA Viruses RNA, Viral Swine Swine Diseases Abstract: UNLABELLED: Metagenomic shotgun ...
Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities
Scientific Data, Volume 11, Issue 1 (2024) ISBN: 2052-4463 Abstract: Taxonomic classification is crucial in identifying organisms within diverse microbial communities when using metagenomics shotgun ...
Towards facilitated interpretation of shotgun metagenomics long-read sequencing data analyzed with KMA for the detection of bacterial pathogens and their antimicrobial resistance genes
Publication Type: Peer reviewed scientific article Authors: Mathieu Gand; Navickaite, Indre; Bartsch, Lee-Julia; Grützke, Josephine; Overballe-Petersen, Søren; Rasmussen, Astrid; Otani, Saria; Michelacci, Valeria; Matamoros, Bosco Rodríguez; González-Zorn ...
Strain-level characterization without culture enrichment? Easing and accelerating outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling
Keersmaecker Source: BSFM, BSFM, Brussels, Belgium (2023) Keywords: adaptive sampling nanopore outbreak investigation shotgun metagenomics Abstract: Introduction Traditionally, the investigation of suspect food ...
Development of strain-level shotgun metagenomics approaches to detect and characterize microbiological contaminants in the context of food safety
Safety microbiological contaminants shotgun metagenomics Abstract: Foodborne contaminations are a global burden on public health worldwide. For many years, and until recently, the microbial contaminants ...
Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteriaAbstractBackgroundResultsConclusion
Keywords: DNA extraction HMW DNA Long-read Metagenomics Method evaluation nanopore Abstract: Background: Oxford Nanopore Technologies (ONT) offers an accessible platform for long-read sequencing, which ...
Metagenomic Characterization of Multiple Genetically Modified Bacillus Contaminations in Commercial Microbial Fermentation Products
12, Issue 12 (2022) Keywords: Bacillus food enzyme genetically modified microorganisms (GMM) hybrid genome assembly metagenomic shotgun sequencing Abstract: Genetically modified microorganisms (GMM) are ...
Shotgun metagenomics for strain-level food-borne outbreak investigation
Publication Type: Scientific poster, presentation or proceeding Authors: Florence E Buytaers Source: FoodMicro (2022) Service: Activités transversales en génomique appliquée Transversale activiteiten in toegepaste genomica Transversal activities in appli ...