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Zoekresultaten - 19 results
The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
by studying the diversity of their strains and providing wellcharacterized biological material to the scientific community for fundamental and applied research. These microbial resource centers thus ...
Galaxy @Sciensano: a comprehensive bioinformatics portal for genomics-based microbial typing, characterization, and outbreak detection.
range of tools provided by the community, complemented by over 50 custom tools and pipelines developed in-house. The tool selection is currently focused primarily on the analysis of WGS data generated ...
Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities
Scientific Data, Volume 11, Issue 1 (2024) ISBN: 2052-4463 Abstract: Taxonomic classification is crucial in identifying organisms within diverse microbial communities when using metagenomics shotgun ...
Foundation of the Belgian Society for Viruses of Microbes and Meeting Report of Its Inaugural Symposium.
9 June 2022 to capture and enhance the collaborative spirit among the expanding community of microbial virus researchers in Belgium. The sixteen founders are affiliated to fourteen different research ...
Development of strain-level shotgun metagenomics approaches to detect and characterize microbiological contaminants in the context of food safety
Safety microbiological contaminants shotgun metagenomics Abstract: Foodborne contaminations are a global burden on public health worldwide. For many years, and until recently, the microbial contaminants ...
Optimised long-read sequence bioinformatics tool for the analysis of the resistome and microbial communities
https://doi.org/10.5281/zenodo.7433258 Keywords: Antimicrobial resistance bioinformatics Long read metagenomic sequencing Microbial community Resistome Health Topics: Antimicrobial resistance (AMR) Food consumption and food safety ...
Shotgun metagenomics as a ONE Health tool for better protecting human health
microbiology. Compared to short read sequencing (Illumina), this technology allows to unambiguously detect and scaffold microbial genes to their host chromosomes, even for complex metagenomics samples, allowing ...
Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study.
species, present in a microbial community, which has up until now not been demonstrated for this application. The current work shows the feasibility of strain-level metagenomics of enriched food matrix ...
Public microbial resources centres: key hubs for FAIR microorganisms and genetic materials.
microbiology, microbial domain biological resource centres (mBRCs) have a long-standing experience in preserving and distributing authenticated microbial strains and genetic materials (e.g., recombinant plasmids, ...
Consensus numbering system for the rifampicin resistance-associated rpoB gene mutations in pathogenic mycobacteria.
Proteins Genotype Genotyping Techniques Humans Microbial Sensitivity Tests Mutant Proteins Mutation Mycobacterium Mycobacterium tuberculosis Rifampin Terminology as Topic Abstract: The rpoB gene codes for ...