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Zoekresultaten - 47 results
First detection of a plasmid-encoded New-Delhi metallo-beta-lactamase-1 (NDM-1) producing Acinetobacter baumannii using whole genome sequencing, isolated in a clinical setting in Benin.
Publication Type: Peer reviewed scientific article Authors: Carine Yehouenou; Bert Bogaerts; Kevin Vanneste; Nancy Roosens; Sigrid C.J. De Keersmaecker; Marchal, Kathleen; Affolabi, Dissou; Reza ...
Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods
Publication Type: Peer reviewed scientific article Authors: Bert Bogaerts; Stéphanie Nouws; Bavo Verhaegen; Sarah Denayer; Julien Van Braekel; Raf Winand; Qiang Fu; Florence Crombé; Denis Piérard; ...
The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country.
Publication Type: Peer reviewed scientific article Authors: Stéphanie Nouws; Bert Bogaerts; Bavo Verhaegen; Sarah Denayer; Florence Crombé; Klara De Rauw; Denis Piérard; Kathleen Marchal; Kevin ...
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates
Publication Type: Peer reviewed scientific article Authors: Stéphanie Nouws; Bert Bogaerts; Bavo Verhaegen; Sarah Denayer; Piérard, Denis; Marchal, Kathleen; Nancy Roosens; Kevin Vanneste; Sigrid ...
Targeting the 16S rRNA gene for bacterial identification in complex mixed samples: comparative evaluation of second (Illumina) and third (Oxford Nanopore Technologies) generation sequencing technologies.
Publication Type: Peer reviewed scientific article Authors: Raf Winand; Bert Bogaerts; Stefan Hoffman; Lefèvre, Loic; Delvoye, Maud; Julien Van Braekel; Fu, Qiang; Nancy Roosens; Sigrid C.J. De ...
Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: as a Proof-of-Concept.
Publication Type: Peer reviewed scientific article Authors: Bert Bogaerts; Raf Winand; Fu, Qiang; Julien Van Braekel; Pieter-Jan Ceyssens; Wesley Mattheus; Sophie Bertrand; Sigrid C.J. De ...
Shifting national surveillance of Shigella infections toward geno-serotyping by the development of a tailored Luminex assay and NGS workflow.
Publication Type: Peer reviewed scientific article Authors: Eleonora Ventola; Bert Bogaerts; Sigrid C.J. De Keersmaecker; Kevin Vanneste; Nancy Roosens; Wesley Mattheus; Pieter-Jan Ceyssens Source: ...
Development of a bioinformatics pipeline for routine analysis of whole genome sequencing data for typing of Neisseria meningitidis
Publication Type: Scientific poster, presentation or proceeding Authors: Bert Bogaerts Source: Big Data in Biology and Health, NA, Issue EMBL, NA (2016) Keywords: a analysi analysis bioinformatics ...
Development and implementation of a transversal NGS & bioinformatics platform at the Belgian Institute of Public Health: deployment of user-friendly pipelines for routine use
Publication Type: Scientific poster, presentation or proceeding Authors: Kevin Vanneste; Q. Fu; Bert Bogaerts; Raf Winand; Romeu,A.G.; Brown,I.; Julien Van Braekel; Sigrid C.J. De Keersmaecker; ...
Development and implementation of a transversal NGS & bioinformatics platform at the Belgian Institute of Public Health
Publication Type: Scientific poster, presentation or proceeding Authors: Kevin Vanneste; Bert Bogaerts; Q. Fu; Raf Winand; Romeu,A.G.; Brown,I.; Sigrid C.J. De Keersmaecker; Nancy Roosens Source: ...