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Zoekresultaten - 36 results
Assessing the authenticity and purity of a commercial Bacillus thuringiensis bioinsecticide through whole genome sequencing and metagenomics approaches
Publication Type: Peer reviewed scientific article Authors: Van Laere, Yari; Fraiture, Marie-Alice; Gobbo, Andrea; Sigrid C.J. De Keersmaecker *; Marchal, Kathleen; Nancy Roosens; Vanneste, Kevin ...
Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium
Publication Type: Peer reviewed scientific article Authors: Berbers, Bas; Vanneste, Kevin; Roosens, Nancy H. C. J.; Marchal, Kathleen; Pieter-Jan Ceyssens *; De Keersmaecker, Sigrid C. J. Source: ...
Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities
Publication Type: Peer reviewed scientific article Authors: Van Uffelen, Alexander; Posadas, Andrés; Roosens, Nancy H. C.; Marchal, Kathleen; De Keersmaecker, Sigrid C. J.; Vanneste, Kevin Source: ...
Transforming Shiga toxin-producing surveillance through whole genome sequencing in food safety practices.
Publication Type: Peer reviewed scientific article Authors: Nouws, Stéphanie; Bavo Verhaegen *; Denayer, Sarah; Florence Crombé *; Denis Piérard; Bert Bogaerts *; Kevin Vanneste *; Kathleen Marchal ...
Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillanceAbstract
Publication Type: Peer reviewed scientific article Authors: Bram Bloemen; Mathieu Gand; Kevin Vanneste; Marchal, Kathleen; Nancy Roosens; Sigrid C.J. De Keersmaecker Source: Scientific Reports, ...
Metagenomics to Detect and Characterize Viruses in Food Samples at Genome Level? Lessons Learnt from a Norovirus Study
Publication Type: Peer reviewed scientific article Authors: Florence E Buytaers; Bavo Verhaegen; Mathieu Gand; Jolien D'aes; Kevin Vanneste; Nancy Roosens; Kathleen Marchal; Sarah Denayer; ...
Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak
Pochet, Brigitte; Vera Cantaert; Marchal, Kathleen; Sarah Denayer; Sigrid C.J. De Keersmaecker Source: Microbial Genomics, Volume 7, Issue 4 (2021) Keywords: food surveillance Metagenomics outbreak ...
Whole-Genome Sequencing-Based Antimicrobial Resistance Characterization and Phylogenomic Investigation of 19 Multidrug-Resistant and Extended-Spectrum Beta-Lactamase-Positive Escherichia coli Strains Collected From Hospital Patients in Benin in 2019.
Publication Type: Peer reviewed scientific article Authors: Carine Laurence Yehouenou; Bert Bogaerts; Sigrid C.J. De Keersmaecker; Nancy Roosens; Marchal, Kathleen; Tchiakpe, Edmond; Affolabi, ...
Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies
Publication Type: Peer reviewed scientific article Authors: Florence E Buytaers; Assia Saltykova; Sarah Denayer; Bavo Verhaegen; Kevin Vanneste; Nancy Roosens; Piérard, Denis; Marchal, Kathleen ...
Phylogenomic Investigation of Increasing Fluoroquinolone Resistance among Belgian Cases of Shigellosis between 2013 and 2018 Indicates Both Travel-Related Imports and Domestic Circulation.
Publication Type: Peer reviewed scientific article Authors: Bert Bogaerts; Raf Winand; Julien Van Braekel; Wesley Mattheus; Sigrid C.J. De Keersmaecker; Nancy Roosens; Marchal, Kathleen; Kevin ...