Zoekresultaten - 155 results
Metagenomics-based tracing of genetically modified microorganism contaminations in commercial fermentation products
feasibility of a metagenomic shotgun sequencing approach to investigate microbial contamination in fermentation products, focusing on source tracing of GMM strains using innovative strain deconvolution and ...
Salmonella spp. as a be.Prepared Case Study for Integrating Microbial Genomic and Health Data in Public Health Surveillance
architecture supports the central collection, processing, and linking of laboratory, clinical, epidemiological data with microbial genomic indicator data derived from Whole Genome Sequencing (WGS) ...
be.Prepared: Setting up a cloud-based bioinformatics platform and coupled NRC usability platform for integrated genomic-epidemiological analysis at a national level
Applied Bioinformatics and Public Health Microbiology, Hixton, UK (2025) Keywords: bioinformatics cloud-based epidemiology genomic surveillance whole genome sequencing Abstract: be.Prepared (Belgian ...
The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
need to implement new standards in species delineation, including whole-genome sequencing and phylogenomics. In this context, the genomic needs of the Belgian Coordinated Collections of Microorganisms ...
Galaxy @Sciensano: a comprehensive bioinformatics portal for genomics-based microbial typing, characterization, and outbreak detection.
Bacterial Genomics Humans SOFTWARE whole genome sequencing Abstract: The influx of whole genome sequencing (WGS) data in the public health and clinical diagnostic sectors has created a need for data analysis ...
An interlaboratory proficiency test using metagenomic sequencing as a diagnostic tool for the detection of RNA viruses in swine fecal material.
interpretation of mNGS results. IMPORTANCE: Metagenomic shotgun sequencing (mNGS) is a generic molecular diagnostic method, involving laboratory preparation of samples, sequencing, bioinformatic analysis of ...
FT-IR spectroscopy as a rapid method for Salmonella spp. typing
sensitivity of the method. Materials and Methods 115 Salmonella isolates fully characterized by whole genome sequencing were included in the study. The strains, originating from food, feed and primary ...
Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing
Kevin Vanneste Source: Frontiers in Microbiology, Volume 14 (2023) Keywords: Bacillus cereus Food Additives riboflavin Surveillance whole-genome sequencing Abstract: Bacillus cereus is a spore-forming ...
Genomic comparison between and and analysis of peptide-based biomarkers for serodiagnosis.
Fretin, David; Marché, Silvie Source: Front Vet Sci, Volume 11 (2024) Keywords: Antigens B-cell epitopes Diagnosis Mycobacterium bovis Mycobacterium microti Tuberculosis whole-genome sequencing Abstract: In ...
Metabarcoding and metagenomics techniques in monitoring airborne pollen
alternative approach is the identification of pollen through molecular sequencing and DNA analysis. Different high-throughput sequencing (HTS) technologies have been used to massively analyse environmental DNA ...